CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_AGRT5 (3-isopropylmalate dehydratase large subunit OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=leuC PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.102e-20
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG++P+ + AKD+IL IIGEI  AG T   +EF G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGKLPESVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRSLSMEGRMTVCNMTIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_PICTO (3-isopropylmalate dehydratase large subunit OS=Picrophilus torridus GN=leuC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.664e-20
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 2
Query:    5 GTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            G DSHT T GA    + GIG+T+AG + GTG++  KVP T    ++G     +  KD+IL ++  I   G+ YK MEF G+T++ L + ERMT+ NM  EAG K
Sbjct:  116 GADSHTNTYGALSCVSVGIGSTEAGVIFGTGRMWFKVPETDLIRINGRPKKGVYGKDIILNVLSRIGNGGSAYKCMEFTGSTIDYLDINERMTMANMTTEAGAK 219          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_BURP8 (3-isopropylmalate dehydratase large subunit OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.664e-20
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  +L K    +   ++G++P    AKD++L IIG+I  AG T  ++EF G+T+  LSME RMT+CNM +EAG +
Sbjct:  128 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLLQKKSKNMLVKVEGQLPHGCTAKDIVLAIIGKIGTAGGTGYAIEFGGSTIRALSMEGRMTVCNMAIEAGAR 229          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHISN (3-isopropylmalate dehydratase large subunit OS=Rhizobium sp. (strain NGR234) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.703e-20
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG++P  + AKD+IL IIGEI  AG T   +EF G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGQLPPGVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRSLSMEGRMTICNMTIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHILW (3-isopropylmalate dehydratase large subunit OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.703e-20
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG +P ++ AKD+IL IIGEI  AG T   +EF G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGLLPPHVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRSLSMEGRMTICNMTIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ACIBL (3-isopropylmalate dehydratase large subunit OS=Acidobacteria bacterium (strain Ellin345) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.703e-20
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG FA GIG ++   VL T  +  + P T++  + G +P+ + AKDL L IIG++   GAT   +E+ GT +  LSME RMTLCNM +E G +
Sbjct:  130 DSHTSTHGAFGAFAFGIGTSEVEHVLATQCLPQRKPKTMKIEVSGTLPEGVTAKDLALGIIGKLGTDGATGHVIEYCGTAIRALSMEARMTLCNMSIEGGAR 231          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SINMW (3-isopropylmalate dehydratase large subunit OS=Sinorhizobium medicae (strain WSM419) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.137e-19
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG++P  + AKD+IL IIGEI  AG T   +EF G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGQLPPGVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRSLSMEGRMTVCNMTIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHIME (3-isopropylmalate dehydratase large subunit OS=Rhizobium meliloti GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.137e-19
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG++P  + AKD+IL IIGEI  AG T   +EF G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGQLPPGVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRSLSMEGRMTVCNMTIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_NITHX (3-isopropylmalate dehydratase large subunit OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.137e-19
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R V+ G +PD + AKD+IL IIGEI  AG T   +E+ G  +  L+ME RMT+CNM +E G +
Sbjct:  130 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAVVYGTLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGEAIRALTMEGRMTVCNMSIEGGAR 231          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_MESSB (3-isopropylmalate dehydratase large subunit OS=Mesorhizobium sp. (strain BNC1) GN=leuC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.485e-19
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ +    +   +DG++PD + AKD+IL IIGEI  AG T   +E+ G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQRKAKNMLVQVDGKLPDGVTAKDIILAIIGEIGTAGGTGHVIEYAGEAIRSLSMEGRMTVCNMSIEGGAR 232          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_AGRT55.102e-2047.063-isopropylmalate dehydratase large subunit OS=Agr... [more]
LEUC_PICTO6.664e-2044.233-isopropylmalate dehydratase large subunit OS=Pic... [more]
LEUC_BURP86.664e-2047.063-isopropylmalate dehydratase large subunit OS=Bur... [more]
LEUC_RHISN8.703e-2047.063-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_RHILW8.703e-2047.063-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_ACIBL8.703e-2047.063-isopropylmalate dehydratase large subunit OS=Aci... [more]
LEUC_SINMW1.137e-1947.063-isopropylmalate dehydratase large subunit OS=Sin... [more]
LEUC_RHIME1.137e-1947.063-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_NITHX1.137e-1947.063-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC_MESSB1.485e-1946.083-isopropylmalate dehydratase large subunit OS=Mes... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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