CF509789

Overview
NameCF509789
Unique NameCF509789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 38/98 (38.78%), Postives = 52/98 (53.06%), Query Frame = 2 
Query:   65 WK--LQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHD----SHKVQGYCIDILLEALKLVPYDVPYKFELF--GDGLSNPSYDGLV 334
            WK  L++I WPG     P+GW I    + LRIGVP+R  +   V    D    S  V G+CID     ++ +PYDV Y+F  F   DG +  +Y+ LV
Sbjct:  425 WKDHLKHIVWPGEADSVPKGWQIPTKGKKLRIGVPKRTGYTDLVKVTRDPITNSTVVTGFCIDFFEAVIRELPYDVSYEFIPFEKPDGKTAGNYNDLV 522
[Close]
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR22_ARATH (Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 2 
Query:   71 LQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHD----SHKVQGYCIDILLEALKLVPYDVPYKF 286
            L++I WPG     P+GW I  N + LRIGVP+R  F   V    D    S  V+G+CID     ++ +PYDV Y+F
Sbjct:  429 LKHIIWPGEAVSVPKGWEIPTNGKKLRIGVPKRIGFTDLVKVTRDPITNSTVVKGFCIDFFEAVIQAMPYDVSYEF 504
The following BLAST results are available for this feature:
BLAST of CF509789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GLR23_ARATH1.972e-1138.78Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=... [more]
GLR22_ARATH1.972e-1142.11Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-297 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509789 ID=CF509789; Name=CF509789; organism=Citrus sinensis; type=EST; length=362bp
GAGAGAGAGAGAACTATTCTCTCTCTCTCTTAAAGGGAAAAATGTTAGTC
ATTCCCAACTCGATTGGAAGCTTCAAAATATTACTTGGCCAGGTGGAAAA
ACTGAGACACCACGCGGTTGGGTAATTGCAGATAATGCAAGACCATTGAG
AATTGGAGTGCCAAGGAGAGCCAGCTTTGTTGGATTTGTTACAGAGGAGC
ACGATAGTCATAAAGTCCAAGGATACTGTATTGATATTTTGCTTGAAGCA
CTGAAACTAGTCCCATATGATGTGCCTTACAAATTTGAGCTTTTTGGGGA
TGGTCTGTCCAATCCTAGTTATGATGGGCTTGTGAAAATGGCTGCAAATG
ATGTGTTTGATG
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