CF509796

Overview
NameCF509796
Unique NameCF509796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP7_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 7 OS=Homo sapiens GN=AGAP7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.519e-14
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   83 SLGDCDLTMNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            SL  C+ +   K+ ++ +  A     L+ +  +  N  C DC+ + P+WAS+NLG+ +C++CSGIHRSLG  +S+VRS  LD W
Sbjct:  422 SLQSCE-SSKSKSQLTSQSEAM---ALQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDW 501          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP4_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4 OS=Homo sapiens GN=AGAP4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.519e-14
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  113 EKANVSKELNARHRKI-LEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            E +    +L ++ + + L+ +  +  N  C DC+ + P+WAS+NLG+ +C++CSGIHRSLG  +S+VRS  LD W
Sbjct:  427 ESSKSKSQLTSQSKAMALQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDW 501          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGA11_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 11 OS=Homo sapiens GN=AGAP11 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.519e-14
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   83 SLGDCDLTMNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            SL  C+ +   K+ ++ +  A     L+ +  +  N  C DC+ + P+WAS+NLG+ +C++CSGIHRSLG  +S+VRS  LD W
Sbjct:  309 SLQSCE-SSKSKSQLTSQSEAM---ALQSIQNMRGNSHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDW 388          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG2_PONAB (ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            + + L  +P N+ C DC AK P WAS+  G+F+C+ CSG+HRSLGVH+S +RS  LD+
Sbjct:   13 LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 70          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG2_HUMAN (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            + + L  +P N+ C DC AK P WAS+  G+F+C+ CSG+HRSLGVH+S +RS  LD+
Sbjct:   13 LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 70          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  143 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            A  + + + L   P N+ C DC AK P WAS+  G+F+C+ CSG+HRSLGVH+S +RS  LD+
Sbjct:    8 AEIQAVFKRLRAAPTNKSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 70          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG1_RAT (ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R RK+L+ +    EN  C +C A  P+W SV  GI+IC++CSG HR LGVH+S VRS T+D W
Sbjct:    5 RTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKW 67          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG1_MOUSE (ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R RK+L+ +    EN  C +C A  P+W SV  GI+IC++CSG HR LGVH+S VRS T+D W
Sbjct:    5 RTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKW 67          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG3_RAT (ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            I + L  +P N+ C DC AK P WAS++ G+F+C+ CSG HRSLGVH+S +RS  LD+
Sbjct:   12 IFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 69          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG3_MOUSE (ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            I + L  +P N+ C DC AK P WAS++ G+F+C+ CSG HRSLGVH+S +RS  LD+
Sbjct:   12 IFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 69          
The following BLAST results are available for this feature:
BLAST of CF509796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
AGAP7_HUMAN5.519e-1440.48Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP4_HUMAN5.519e-1441.33Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGA11_HUMAN5.519e-1440.48Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ARFG2_PONAB7.207e-1451.72ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_HUMAN7.207e-1451.72ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_XENTR9.413e-1449.21ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_RAT9.413e-1452.38ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_MOUSE9.413e-1452.38ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_RAT1.229e-1353.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MOUSE1.229e-1353.45ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-304 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509796 ID=CF509796; Name=CF509796; organism=Citrus sinensis; type=EST; length=337bp
GAGAAATATCACAGAGGGAAAGAGAGGGGAGGGACCGAAAAGACCAGATT
GCCCTCTCAATTCGTGCGAATTTTCATTTCTCTCTCTCGGAGACTGCGAT
CTCACAATGAACGAGAAGGCCAACGTCTCTAAAGAGCTAAACGCTAGACA
CAGGAAGATTCTGGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGCG
CTGACTGCAAAGCCAAAGGTCCAAGATGGGCTAGTGTGAATTTGGGAATC
TTTATCTGCATGCAATGTTCTGGGATCCACAGGAGTCTTGGTGTACACAT
ATCAAAGGTTAGATCTGCTACCTTGGATACCTGGCTT
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