CF509796

Overview
NameCF509796
Unique NameCF509796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG1_HUMAN (ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R RK+L+ +    EN  C +C A  P+W SV  GI+IC++CSG HR LGVH+S VRS T+D W
Sbjct:    5 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKW 67          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            I + L  +P N+ C DC AK P WAS+  G+F+C+ CSG HRSLGVH+S +RS  LD+
Sbjct:   12 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 69          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            I + L  +P N+ C DC AK P WAS+  G+F+C+ CSG HRSLGVH+S +RS  LD+
Sbjct:   12 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 69          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG3_HUMAN (ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            I + L  +P N+ C DC AK P WAS+  G+F+C+ CSG HRSLGVH+S +RS  LD+
Sbjct:   12 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 69          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  158 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            I + L  +P N+ C DC AK P WAS+  G+F+C+ CSG HRSLGVH+S +RS  LD+
Sbjct:   12 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 69          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP9_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 OS=Homo sapiens GN=AGAP9 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  161 LEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            L+ +  +  N  C DC+ + P+WAS+NLG+ +C++CSGIHRS G  +S+VRS  LD W
Sbjct:  512 LQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSFGTRLSRVRSLELDDW 569          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP8_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 8 OS=Homo sapiens GN=AGAP8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   83 SLGDCDLTMNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            SL  C+ +   K+ ++ +  A     L+ +  +  N  C DC+ + P+WAS+NLG+ +C++CSGIH SLG  +S+VRS  LD W
Sbjct:  422 SLQSCE-SSKSKSQLTSQSEAM---ALQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHHSLGTRLSRVRSLELDDW 501          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGA10_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 10 OS=Homo sapiens GN=AGAP10 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  161 LEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            L+ +  +  N  C DC+ + P+WAS+NLG+ +C++CSGIHRS G  +S+VRS  LD W
Sbjct:  467 LQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSFGTRLSRVRSLELDDW 524          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP2_RAT (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.739e-13
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 2
Query:  188 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            N  C DC A  P WAS+NLG  IC++CSGIHR+LG H+S+VRS  LD W
Sbjct:  937 NSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDW 985          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP2_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.739e-13
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 2
Query:  188 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            N  C DC A  P WAS+NLG  IC++CSGIHR+LG H+S+VRS  LD W
Sbjct:  937 NSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDW 985          
The following BLAST results are available for this feature:
BLAST of CF509796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
ARFG1_HUMAN1.229e-1352.38ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_PONAB1.606e-1353.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA1.606e-1353.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_HUMAN1.606e-1353.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_BOVIN1.606e-1353.45ADP-ribosylation factor GTPase-activating protein ... [more]
AGAP9_HUMAN2.097e-1348.28Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP8_HUMAN2.097e-1339.29Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGA10_HUMAN2.097e-1348.28Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_RAT2.739e-1361.22Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_MOUSE2.739e-1361.22Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-304 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509796 ID=CF509796; Name=CF509796; organism=Citrus sinensis; type=EST; length=337bp
GAGAAATATCACAGAGGGAAAGAGAGGGGAGGGACCGAAAAGACCAGATT
GCCCTCTCAATTCGTGCGAATTTTCATTTCTCTCTCTCGGAGACTGCGAT
CTCACAATGAACGAGAAGGCCAACGTCTCTAAAGAGCTAAACGCTAGACA
CAGGAAGATTCTGGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGCG
CTGACTGCAAAGCCAAAGGTCCAAGATGGGCTAGTGTGAATTTGGGAATC
TTTATCTGCATGCAATGTTCTGGGATCCACAGGAGTCTTGGTGTACACAT
ATCAAAGGTTAGATCTGCTACCTTGGATACCTGGCTT
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