CF509796

Overview
NameCF509796
Unique NameCF509796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: UCP3_SCHPO (UBA domain-containing protein 3 OS=Schizosaccharomyces pombe GN=ucp3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 2
Query:  188 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            N  CADC  +G +WAS NLGIF+C++C+ IHR LG H+SKV+S +LD W
Sbjct:   20 NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEW 68          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARAP3_MOUSE (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Arap3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  155 KILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            ++ E +   P NR CADC+A  P WA+VNLG+ IC QC+G HR+LG  ISKV+S  LDT
Sbjct:  485 EVAEKVWSNPANRHCADCRASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDT 543          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: CTLFB_HUMAN (Putative centaurin-gamma-like family member 11P OS=Homo sapiens GN=CTGLF11P PE=5 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   83 SLGDCDLTMNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            SL  C+ +   K+ ++ +  A     L+ +  +  N  C DC+ + P+WAS+NLG+ +C++CSGIH SLG  +S+VRS  LD W
Sbjct:  430 SLQSCE-SSKSKSQLTSQSEAM---ALQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHCSLGTRLSRVRSLELDDW 509          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP1_RAT (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Rattus norvegicus GN=Asap1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  113 EKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            E++     L    + I+E + +LP N  C DC +  P W S NLGI  C++CSGIHR +GVHIS+++S  LD
Sbjct:  438 EQSTGENSLEDLTKAIIEDVQRLPGNDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD 509          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP1_MOUSE (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Asap1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  113 EKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            E++     L    + I+E + +LP N  C DC +  P W S NLGI  C++CSGIHR +GVHIS+++S  LD
Sbjct:  441 EQSTGENSLEDLTKAIIEDVQRLPGNDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD 512          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP2_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 2
Query:  188 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            N  C DC A  P WAS+NLG  IC++CSGIHR+LG H+S+VRS  LD W
Sbjct:  943 NSICVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDW 991          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ADAP1_HUMAN (Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens GN=ADAP1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R R +LE LL+ P N  CADC A  P WAS  LG+FIC+ CSGIHR++   +SKV+S  LD W
Sbjct:    5 RRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAW 65          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: GCS1_YEAST (ADP-ribosylation factor GTPase-activating protein GCS1 OS=Saccharomyces cerevisiae GN=GCS1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  152 RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            R++L+ L K+  N++C DC A  P+WA+   G FIC++C+GIHR LGVHIS VRS T+D
Sbjct:   12 RRLLQ-LQKIGANKKCMDCGAPNPQWATPKFGAFICLECAGIHRGLGVHISFVRSITMD 69          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP1_BOVIN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ASAP1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  113 EKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            E++     L    + I+E + +LP N  C DC +  P W S NLGI  C++CSGIHR +GVHIS+++S  LD
Sbjct:  429 EQSAGESSLEELTKAIIEDVQRLPGNDVCCDCGSAEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD 500          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP3_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Agap3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 45/139 (32.37%), Postives = 66/139 (47.48%), Query Frame = 2
Query:   17 GKRGEGPKRPDCPLNSCE-----FSFLSLGDCDLTMNEKANVSKE-------LNARHRKILEGLLKLPE---------------------NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            GK+  G  RPD P ++ E     F F+ +     T + +A+ ++E       + A+    L+G     +                     N  C DC+A  P WAS+NLG  +C++CSGIHR LG H+S+VRS  LD W
Sbjct:  583 GKKSTGTPRPDGPSSAAEEAEESFEFVVVSLTGQTWHFEASTAEERELWVQSVQAQILASLQGCRSAKDKTRLGNQNTALAVQAVRTVRGNSLCIDCEAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDW 721          
The following BLAST results are available for this feature:
BLAST of CF509796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UCP3_SCHPO3.577e-1359.18UBA domain-containing protein 3 OS=Schizosaccharom... [more]
ARAP3_MOUSE3.577e-1355.93Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
CTLFB_HUMAN4.672e-1339.29Putative centaurin-gamma-like family member 11P OS... [more]
ASAP1_RAT4.672e-1344.44Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_MOUSE4.672e-1344.44Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
AGAP2_HUMAN4.672e-1361.22Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ADAP1_HUMAN4.672e-1355.56Arf-GAP with dual PH domain-containing protein 1 O... [more]
GCS1_YEAST6.101e-1354.24ADP-ribosylation factor GTPase-activating protein ... [more]
ASAP1_BOVIN6.101e-1344.44Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
AGAP3_MOUSE6.101e-1332.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-304 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509796 ID=CF509796; Name=CF509796; organism=Citrus sinensis; type=EST; length=337bp
GAGAAATATCACAGAGGGAAAGAGAGGGGAGGGACCGAAAAGACCAGATT
GCCCTCTCAATTCGTGCGAATTTTCATTTCTCTCTCTCGGAGACTGCGAT
CTCACAATGAACGAGAAGGCCAACGTCTCTAAAGAGCTAAACGCTAGACA
CAGGAAGATTCTGGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGCG
CTGACTGCAAAGCCAAAGGTCCAAGATGGGCTAGTGTGAATTTGGGAATC
TTTATCTGCATGCAATGTTCTGGGATCCACAGGAGTCTTGGTGTACACAT
ATCAAAGGTTAGATCTGCTACCTTGGATACCTGGCTT
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