CF509796

Overview
NameCF509796
Unique NameCF509796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP1_HUMAN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ASAP1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.969e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  152 RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            + I+E + +LP N  C DC +  P W S NLGI  C++CSGIHR +GVHIS+++S  LD
Sbjct:  439 KAIIEDVQRLPGNDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD 497          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP5_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5 OS=Homo sapiens GN=AGAP5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   83 SLGDCDLTMNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            SL  C+ +   K+ ++ +  A     L+ +  +  N  C D + + P+WAS+NLG+ +C++CSGIHRSLG  +S+VRS  LD W
Sbjct:  422 SLQSCE-SSKSKSQLTSQSEAM---ALQSIQNMRGNAHCVDYETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDW 501          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: GLO3_YEAST (ADP-ribosylation factor GTPase-activating protein GLO3 OS=Saccharomyces cerevisiae GN=GLO3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:  185 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            ENR C DC  K P W SV  G+ +C+QCS +HR++GVHI+ V+S+TLD W
Sbjct:   27 ENRVCFDCGNKNPTWTSVPFGVMLCIQCSAVHRNMGVHITFVKSSTLDKW 76          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGAP3_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 2
Query:  188 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            N  C DC A  P WAS+NLG  +C++CSGIHR LG H+S+VRS  LD W
Sbjct:  638 NSFCIDCDAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDW 686          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: YQP4_CAEEL (Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.955e-12
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  179 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD---TWL 337
            LP N+ C DC A+ P W +V  G+F+C+ CS +HR+LGVH++ VRS  LD   TWL
Sbjct:   22 LPPNKLCFDCGARNPTWCTVTYGVFLCIDCSAVHRNLGVHLTFVRSTNLDTNWTWL 77          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP2_MOUSE (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Asap2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.955e-12
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  122 NVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            N+ +EL    ++I+  + ++  N  C DC A  P W S NLGI  C++CSGIHR LGVH S+++S TLD
Sbjct:  417 NIVQELT---KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD 482          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP2_HUMAN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ASAP2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.955e-12
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  122 NVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            N+ +EL    ++I+  + ++  N  C DC A  P W S NLGI  C++CSGIHR LGVH S+++S TLD
Sbjct:  414 NIVQELT---KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD 479          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: YDBH_SCHPO (Uncharacterized protein C22E12.17c OS=Schizosaccharomyces pombe GN=SPAC22E12.17c PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 2
Query:  152 RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKV---RSATLDTW 334
            +K+L  L    +N+ C DC AK P W+S   GI++C+ CS  HR++GVHIS V   RS  LD+W
Sbjct:    9 QKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRSTVLDSW 72          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ARAP3_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ARAP3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 2
Query:  188 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 331
            NR+CADC +  P WA+VNLG+ IC QC+G HR+LG  ISKV+S  LDT
Sbjct:  501 NRQCADCGSSRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDT 548          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP3_HUMAN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ASAP3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 2
Query:  182 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            P N +C DC A  P W S NLG+  C+QCSG+HR LGV  S+++S TLD
Sbjct:  436 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD 484          
The following BLAST results are available for this feature:
BLAST of CF509796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
ASAP1_HUMAN7.969e-1350.85Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
AGAP5_HUMAN1.041e-1239.29Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
GLO3_YEAST1.359e-1256.00ADP-ribosylation factor GTPase-activating protein ... [more]
AGAP3_HUMAN2.319e-1259.18Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
YQP4_CAEEL3.955e-1251.79Uncharacterized protein F07F6.4 OS=Caenorhabditis ... [more]
ASAP2_MOUSE3.955e-1246.38Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP2_HUMAN3.955e-1246.38Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
YDBH_SCHPO1.151e-1146.88Uncharacterized protein C22E12.17c OS=Schizosaccha... [more]
ARAP3_HUMAN1.151e-1162.50Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
ASAP3_HUMAN1.963e-1155.10Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-304 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509796 ID=CF509796; Name=CF509796; organism=Citrus sinensis; type=EST; length=337bp
GAGAAATATCACAGAGGGAAAGAGAGGGGAGGGACCGAAAAGACCAGATT
GCCCTCTCAATTCGTGCGAATTTTCATTTCTCTCTCTCGGAGACTGCGAT
CTCACAATGAACGAGAAGGCCAACGTCTCTAAAGAGCTAAACGCTAGACA
CAGGAAGATTCTGGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGCG
CTGACTGCAAAGCCAAAGGTCCAAGATGGGCTAGTGTGAATTTGGGAATC
TTTATCTGCATGCAATGTTCTGGGATCCACAGGAGTCTTGGTGTACACAT
ATCAAAGGTTAGATCTGCTACCTTGGATACCTGGCTT
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