CF509796

Overview
NameCF509796
Unique NameCF509796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ASAP3_MOUSE (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Asap3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.563e-11
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 
Query:  182 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 328
            P N  C DC A  P W S NLG+  C+QCSG+HR LGV  S+++S TLD
Sbjct:  435 PGNDRCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRIQSLTLD 483
[Close]
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ADAP2_HUMAN (Arf-GAP with dual PH domain-containing protein 2 OS=Homo sapiens GN=ADAP2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.459e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 2 
Query:  146 RHRKILEGLLKLPE--NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R++K L  LL+ P+  N  CADC A  P WAS  LGIFIC+ C G+HR+    IS+V+S  LD W
Sbjct:    6 RNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCGVHRNF-PDISRVKSVRLDFW 69
The following BLAST results are available for this feature:
BLAST of CF509796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
ASAP3_MOUSE2.563e-1155.10Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ADAP2_HUMAN7.459e-1150.77Arf-GAP with dual PH domain-containing protein 2 O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-304 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509796 ID=CF509796; Name=CF509796; organism=Citrus sinensis; type=EST; length=337bp
GAGAAATATCACAGAGGGAAAGAGAGGGGAGGGACCGAAAAGACCAGATT
GCCCTCTCAATTCGTGCGAATTTTCATTTCTCTCTCTCGGAGACTGCGAT
CTCACAATGAACGAGAAGGCCAACGTCTCTAAAGAGCTAAACGCTAGACA
CAGGAAGATTCTGGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGCG
CTGACTGCAAAGCCAAAGGTCCAAGATGGGCTAGTGTGAATTTGGGAATC
TTTATCTGCATGCAATGTTCTGGGATCCACAGGAGTCTTGGTGTACACAT
ATCAAAGGTTAGATCTGCTACCTTGGATACCTGGCTT
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