CF509801

Overview
NameCF509801
Unique NameCF509801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 69/137 (50.36%), Postives = 93/137 (67.88%), Query Frame = 2
Query:   32 GKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD--PNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKK-----DLYVKSVQRTVIWMGKKQETV 421
            GK+L K VM+TWLPA+  +LE +   LPSP  +QK R + LYEGP DD+ ANAI+ CD     P+ +YVSKMIP++D  RF AFGRVFSGK+  G+K+R+  P Y PG ++      ++ KSV RTV+ MG+  + V
Sbjct:  321 GKSLFKEVMKTWLPAADCILEQIALKLPSPLQSQKLRYDYLYEGPADDEVANAIKMCDGSDEAPVSMYVSKMIPSND-NRFIAFGRVFSGKIFPGMKIRVQEPGYSPGSEELSNTSLIHNKSVLRTVVMMGRGYKDV 456          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424
            +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  +W+   +  +E
Sbjct:  403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424
            +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  +W+   +  +E
Sbjct:  402 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 539          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424
            +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  +W+   +  +E
Sbjct:  403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424
            +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+  CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  +W+   +  +E
Sbjct:  403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424
            +  EE  L  + L++ V + +    +  ++M + H+PSP    K ++E+ Y G +D     A+ +CDP+GPLM + +KM    D  +F AFGRV SG +  G  V+++G NY   +++D  + +V R  +W+   +  +E
Sbjct:  403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   71 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 328
            P  + LL+M++ HLP+P  AQKYR+ N+++G L+ +   A+ NCDPNGP+   V+K+I     G   A  R+FSG++  G ++R++
Sbjct:  243 PLHAVLLDMVVTHLPNPVEAQKYRIPNIWKGDLESEIGKAMVNCDPNGPMAGVVTKIIMDKHAGAISAC-RLFSGRIKQGDELRLV 327          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   35 KALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 337
            K + +RV +   P    +L+M++ HLPSP  AQKYRV  L+ G L+ +Y  A+   DPNGP +  V+K+I      +  A  RV+SG +  G++V ++  N
Sbjct:  237 KEIRRRVWEI-APLYRVVLDMVVRHLPSPKEAQKYRVPKLWHGDLNSKYGKAMLEADPNGPAVAVVTKVIVDKTSKQETAIARVWSGTIRRGMEVWLLNAN 336          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 2
Query:   71 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424
            P    +L+M++ HLP+P  AQKYR+ +L+ G ++     A+ NCDP GP+ + V+K+I     G   A GRV+SG V TG +V      Y+   K+      +Q+  I+MG ++  +E
Sbjct:  243 PLHVVVLDMVVKHLPNPLEAQKYRIPHLWRGDINSDVGQAMMNCDPKGPMTMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERINME 350          
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 2
Query:    2 TMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424
            T+K + + L  KA          P    +L+M++ HLPSP  AQKYR+ +L+EG +      A+ NCDP G +++ V+K+I     G   A GRV+SG V +G +V      Y+   K+      +Q+  I+MG ++  +E
Sbjct:  230 TLKGDNRTLRQKA----------PLHVVVLDMVVRHLPSPIEAQKYRIPHLWEGDISSDIGQAMLNCDPKGKMVMVVTKIIIDKHAGE-VATGRVWSGTVKSGQEV------YLINTKRK---ARIQQVGIYMGPERINME 350          
The following BLAST results are available for this feature:
BLAST of CF509801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EF2_ENCCU2.975e-3150.36Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
U5S1_PONAB2.889e-1831.43116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE2.889e-1831.43116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN2.889e-1831.43116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK2.889e-1831.43116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN2.889e-1831.43116 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_META31.256e-1340.70Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
EF2_NANEQ2.142e-1337.62Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
EF2_PYRKO2.798e-1335.59Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_PYRHO3.654e-1333.33Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-309 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509801 ID=CF509801; Name=CF509801; organism=Citrus sinensis; type=EST; length=426bp
CACGATGAAGTCAGAAGAGAAGGATTTGATGGGCAAGGCATTGATGAAGC
GTGTCATGCAGACCTGGCTTCCTGCAAGTAGTGCACTTTTGGAAATGATG
ATCTTTCACCTTCCCTCTCCTTCCACGGCCCAAAAATATCGTGTTGAGAA
CTTGTATGAGGGTCCTCTTGATGATCAATATGCTAATGCTATTCGGAACT
GTGATCCTAATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCA
TCTGATAAGGGTAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGTAAGGT
GTCAACAGGTTTGAAGGTCAGGATCATGGGTCCAAACTATGTTCCTGGTG
AGAAGAAAGATTTGTATGTTAAGAGCGTCCAAAGGACTGTTATTTGGATG
GGAAAGAAGCAGGAAACCGTTGAGGA
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