CF509801
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31 Identity = 69/137 (50.36%), Postives = 93/137 (67.88%), Query Frame = 2 Query: 32 GKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD--PNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKK-----DLYVKSVQRTVIWMGKKQETV 421 GK+L K VM+TWLPA+ +LE + LPSP +QK R + LYEGP DD+ ANAI+ CD P+ +YVSKMIP++D RF AFGRVFSGK+ G+K+R+ P Y PG ++ ++ KSV RTV+ MG+ + V Sbjct: 321 GKSLFKEVMKTWLPAADCILEQIALKLPSPLQSQKLRYDYLYEGPADDEVANAIKMCDGSDEAPVSMYVSKMIPSND-NRFIAFGRVFSGKIFPGMKIRVQEPGYSPGSEELSNTSLIHNKSVLRTVVMMGRGYKDV 456
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18 Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2 Query: 5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424 + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R +W+ + +E Sbjct: 403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18 Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2 Query: 5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424 + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R +W+ + +E Sbjct: 402 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 539
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18 Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2 Query: 5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424 + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R +W+ + +E Sbjct: 403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18 Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 2 Query: 5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424 + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R +W+ + +E Sbjct: 403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18 Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 2 Query: 5 MKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424 + EE L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R +W+ + +E Sbjct: 403 LTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGR--LWISVARYHIE 540
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13 Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 71 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 328 P + LL+M++ HLP+P AQKYR+ N+++G L+ + A+ NCDPNGP+ V+K+I G A R+FSG++ G ++R++ Sbjct: 243 PLHAVLLDMVVTHLPNPVEAQKYRIPNIWKGDLESEIGKAMVNCDPNGPMAGVVTKIIMDKHAGAISAC-RLFSGRIKQGDELRLV 327
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 35 KALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 337 K + +RV + P +L+M++ HLPSP AQKYRV L+ G L+ +Y A+ DPNGP + V+K+I + A RV+SG + G++V ++ N Sbjct: 237 KEIRRRVWEI-APLYRVVLDMVVRHLPSPKEAQKYRVPKLWHGDLNSKYGKAMLEADPNGPAVAVVTKVIVDKTSKQETAIARVWSGTIRRGMEVWLLNAN 336
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13 Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 2 Query: 71 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424 P +L+M++ HLP+P AQKYR+ +L+ G ++ A+ NCDP GP+ + V+K+I G A GRV+SG V TG +V Y+ K+ +Q+ I+MG ++ +E Sbjct: 243 PLHVVVLDMVVKHLPNPLEAQKYRIPHLWRGDINSDVGQAMMNCDPKGPMTMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERINME 350
BLAST of CF509801 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13 Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 2 TMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 424 T+K + + L KA P +L+M++ HLPSP AQKYR+ +L+EG + A+ NCDP G +++ V+K+I G A GRV+SG V +G +V Y+ K+ +Q+ I+MG ++ +E Sbjct: 230 TLKGDNRTLRQKA----------PLHVVVLDMVVRHLPSPIEAQKYRIPHLWEGDISSDIGQAMLNCDPKGKMVMVVTKIIIDKHAGE-VATGRVWSGTVKSGQEV------YLINTKRK---ARIQQVGIYMGPERINME 350 The following BLAST results are available for this feature:
BLAST of CF509801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509801 ID=CF509801; Name=CF509801; organism=Citrus sinensis; type=EST; length=426bpback to top |