CF509805

Overview
NameCF509805
Unique NameCF509805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            ++NLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKW+K QA
Sbjct:  349 SVNLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWDKVQA 393          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  350 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKW+K QA
Sbjct:  349 TINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWDKAQA 393          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 134
            I+LDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  317 IHLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 359          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_PETCR (S-adenosylmethionine synthetase 2 (Fragment) OS=Petroselinum crispum GN=SMS-2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            +INLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  103 SINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 144          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            +INLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  192 SINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 233          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            +INLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  349 SINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_CATRO (S-adenosylmethionine synthetase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            INLDLKRGG+GRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  350 INLDLKRGGSGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            INLDL RGGNGR+LKTAAYGHFGR+DPDFTWEVVKPLKWE+P A
Sbjct:  353 INLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA 396          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.150e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 134
            I+LDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EKPQ
Sbjct:  350 ISLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKSEKPQ 392          
The following BLAST results are available for this feature:
BLAST of CF509805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_LITCN3.317e-1988.89S-adenosylmethionine synthetase OS=Litchi chinensi... [more]
METK5_VITVI3.317e-19100.00S-adenosylmethionine synthetase 5 OS=Vitis vinifer... [more]
METK2_PICSI3.317e-1991.11S-adenosylmethionine synthetase 2 OS=Picea sitchen... [more]
METK3_ACTCH4.333e-1995.35S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]
METK2_PETCR7.391e-1995.24S-adenosylmethionine synthetase 2 (Fragment) OS=Pe... [more]
METK1_PETCR7.391e-1995.24S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK2_BETVU1.261e-1895.24S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK1_CATRO1.261e-1897.56S-adenosylmethionine synthetase 1 OS=Catharanthus ... [more]
METK3_ORYSJ1.646e-1888.64S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK2_POPTR2.150e-1895.35S-adenosylmethionine synthetase 2 OS=Populus trich... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-313 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509805 ID=CF509805; Name=CF509805; organism=Citrus sinensis; type=EST; length=424bp
TGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAG
ACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGA
AGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTG
AAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGA
TGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATC
TCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTC
TTCTTTCCCCACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCAC
TGTTGTGTAGTGATATCGATTGAGAATTTTGCTCAACTGGTGCCTGGAAT
TAATAAAATTCTTCCTTTTGCTTA
back to top