CF509805

Overview
NameCF509805
Unique NameCF509805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.808e-18
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGN RF+KTAAYGHFGRDDPDFTWEVVKPLKW+KP A
Sbjct:  352 TINLDLKRGGN-RFIKTAAYGHFGRDDPDFTWEVVKPLKWDKPAA 395          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            +INLDLKRGGNGR  KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  349 SINLDLKRGGNGRSQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_PHALU (S-adenosylmethionine synthetase OS=Phaseolus lunatus GN=SAMS PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            +INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  350 SINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 391          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 134
            INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EK Q
Sbjct:  350 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQ 392          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            +INLDL RGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  324 SINLDLLRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 365          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.171e-18
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            INLDLKRGG+GR+LKTAAYGHFGRD  DFTWEVVKPLKWEKP A
Sbjct:  353 INLDLKRGGSGRYLKTAAYGHFGRDGADFTWEVVKPLKWEKPSA 396          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 125
            +INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  350 SINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 125
            +INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  350 SINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 125
            +INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  350 SINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            +INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VKPLKWEK  A
Sbjct:  349 SINLDLKRGGNARFQKTAAYGHFGRDDPDFTWETVKPLKWEKVPA 393          
The following BLAST results are available for this feature:
BLAST of CF509805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_DENCR2.808e-1891.11S-adenosylmethionine synthetase OS=Dendrobium crum... [more]
METK_PINBN3.668e-1888.89S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK_PHALU3.668e-1892.86S-adenosylmethionine synthetase OS=Phaseolus lunat... [more]
METK4_VITVI4.790e-1895.35S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK1_PEA4.790e-1892.86S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK4_HORVU8.171e-1888.64S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK_POPDE1.067e-1792.68S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK5_POPTR1.067e-1792.68S-adenosylmethionine synthetase 5 OS=Populus trich... [more]
METK3_POPTR1.067e-1792.68S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK2_SUASA1.394e-1786.67S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-313 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509805 ID=CF509805; Name=CF509805; organism=Citrus sinensis; type=EST; length=424bp
TGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAG
ACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGA
AGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTG
AAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGA
TGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATC
TCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTC
TTCTTTCCCCACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCAC
TGTTGTGTAGTGATATCGATTGAGAATTTTGCTCAACTGGTGCCTGGAAT
TAATAAAATTCTTCCTTTTGCTTA
back to top