CF509805

Overview
NameCF509805
Unique NameCF509805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKP 113
            TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKP
Sbjct:  349 TINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            +INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  351 SINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  354 INLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  354 INLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  354 INLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  354 INLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.225e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 128
            +INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLK  K
Sbjct:  351 SINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGK 392          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            INLDLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  350 INLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            I LDLK+GGN R+LKTAAYGHFGR+DPDFTWE  K LKWEKPQA
Sbjct:  354 IALDLKKGGN-RYLKTAAYGHFGREDPDFTWEAAKTLKWEKPQA 396          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  351 TINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
The following BLAST results are available for this feature:
BLAST of CF509805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_CARPA1.305e-1597.30S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK1_PICSI1.305e-1585.71S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK4_ATRNU1.704e-1584.09S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK3_ATRNU1.704e-1584.09S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK2_ATRNU1.704e-1584.09S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU1.704e-1584.09S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK_MEDFA2.225e-1588.10S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK3_ARATH4.957e-1594.74S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK2_DIACA4.957e-1581.82S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK1_HORVU4.957e-1582.22S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-313 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509805 ID=CF509805; Name=CF509805; organism=Citrus sinensis; type=EST; length=424bp
TGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAG
ACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGA
AGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTG
AAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGA
TGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATC
TCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTC
TTCTTTCCCCACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCAC
TGTTGTGTAGTGATATCGATTGAGAATTTTGCTCAACTGGTGCCTGGAAT
TAATAAAATTCTTCCTTTTGCTTA
back to top