CF509805

Overview
NameCF509805
Unique NameCF509805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    9 NLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            NLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK L+
Sbjct:  354 NLDLKRGGNKRYQKTAAYGHFGRDDPDFTWETVKKLE 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            +INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  349 SINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            +INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  349 SINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            +INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  349 SINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            +INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  349 SINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            +INLDL RGGN R+ KTAAYGHFGRDDPDF+WE VK LK
Sbjct:  349 SINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            INLDLKRGGN R+ KTAA GH GRDDPDFTWE VK LK
Sbjct:  350 INLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            INLDLKRGGN R+ KTAAYGHFGRDD D TWE VK LK
Sbjct:  350 INLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKILK 387          
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 3
Query:    6 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 119
            INLDL RGGN R+ KTAAYGHFGRD+ DFTWE VK LK
Sbjct:  350 INLDLLRGGNFRYQKTAAYGHFGRDEADFTWETVKALK 387          
The following BLAST results are available for this feature:
BLAST of CF509805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_CHLRE1.763e-1283.78S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK3_SOLLC1.763e-1282.05S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU1.763e-1282.05S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK2_PETHY3.928e-1275.56S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK1_PETHY3.928e-1275.56S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK1_TOBAC5.130e-1279.49S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK3_CATRO1.949e-1181.58S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_ACTCH1.949e-1181.58S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]
METK2_TOBAC4.343e-1178.95S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-313 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509805 ID=CF509805; Name=CF509805; organism=Citrus sinensis; type=EST; length=424bp
TGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAG
ACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGA
AGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTG
AAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGA
TGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATC
TCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTC
TTCTTTCCCCACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCAC
TGTTGTGTAGTGATATCGATTGAGAATTTTGCTCAACTGGTGCCTGGAAT
TAATAAAATTCTTCCTTTTGCTTA
back to top