CF509819

Overview
NameCF509819
Unique NameCF509819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.988e-14
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  206 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCLDF 535
            F  + +++ K Y SVE    R   F+ N   I++ N++  ++++ LN+F+D S+ E +   L +  QNCSAT K N+       P + DWR+ G +VSPVK+QG C SC  F
Sbjct:   33 FKSWMKQHQKTYSSVE-YNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQNCSAT-KSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTF 142          

HSP 2 Score: 26.5646 bits (57), Expect = 2.988e-14
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  528 WTFSTTGSLEAA 563
            WTFSTTG+LE+A
Sbjct:  140 WTFSTTGALESA 151          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  245 SVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPETKDWRESGIVSPVKDQGHCGSCLDF 535
            S+ E   RF  F  NL  +   N K LSYRLGL +FAD + +E++   LGA        + + +  A   D LPE+ DWR+ G V+ VKDQG CGSC  F
Sbjct:   65 SLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAF 164          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.028e-14
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  185 QARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYR-LGLNKFADWSWEEFQRHRLGAAQNCSATT--KGNHKLTADVL---PETKDWRESGIVSPVKDQGHCGSCLDF 535
            ++++  +F  +  ++ + Y S  E   R++ F  N+D + + N KG S   LGLN FAD + EE+++  LG   N  +     G   L  + L   P++ DWR    V+P+KDQG CGSC  F
Sbjct:   29 ESQYRTAFTEWTLKFNRQYSS-SEFSNRYSIFKSNMDYVDNWNSKGDSQTVLGLNNFADITNEEYRKTYLGTRVNAHSYNGYDGREVLNVEDLQTNPKSIDWRTKNAVTPIKDQGQCGSCWSF 150          

HSP 2 Score: 24.6386 bits (52), Expect = 5.028e-14
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  528 WTFSTTGSLEAAY 566
            W+FSTTGS E A+
Sbjct:  148 WSFSTTGSTEGAH 160          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.506e-14
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 2
Query:  164 SVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCLDF 535
            S  Q   + ++  +F  + + + + Y S EE   R+  F  N+D +   N KG    LGLN FAD + +E++   LG   + SA      +        T DWR  G V+P+K+QG CG C  F
Sbjct:   16 SAKQQFSELQYRNAFTNWMQAHQRTYSS-EEFNARYQIFKSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFSTPAPTVDWRAQGAVTPIKNQGQCGGCWSF 138          

HSP 2 Score: 24.6386 bits (52), Expect = 6.506e-14
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  528 WTFSTTGSLEAAY 566
            W+FSTTGS E A+
Sbjct:  136 WSFSTTGSTEGAH 148          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.105e-13
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  173 QVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATT-KGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCLDF 535
            Q   + ++  +F  +   + K Y S EE   R+  F  N+D ++  N KG    LGLN FAD + EE++   LG   + S+       K+       +KDWR  G V+PVK+QG CG C  F
Sbjct:   19 QQFSELQYRNAFTDWMITHQKSYTS-EEFGARYNIFKANMDYVQQWNSKGSETVLGLNNFADITNEEYRNTYLGTKFDASSLIGTQEEKVFTTSSAASKDWRSEGAVTPVKNQGQCGGCWSF 139          

HSP 2 Score: 24.6386 bits (52), Expect = 1.105e-13
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  528 WTFSTTGSLEAAY 566
            W+FSTTGS E A+
Sbjct:  137 WSFSTTGSTEGAH 149          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  206 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKG----LSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPETKDWRESGIVSPVKDQGHCGSCLDF 535
            +A +   +GK Y +V E + R+A F  NL  I   N        S+RLGLN+FAD + EE++   LG         K + +  A   + LPE+ DWR  G V+ +KDQG CGSC  F
Sbjct:   40 YAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAF 156          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  200 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQ-RHRLGAAQNCSATTKGNH--KLTADVLPETKDWRESGIVSPVKDQGHCGSCLDF 535
            + FA F ++YGK+Y+  +E   RF  F +N++  +           G+  F+D + EEF+ R+R GA+   +A  +      +T    P   DWRE G V+PVK QG CGSC  F
Sbjct:   39 MRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAF 153          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  206 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRL-GAAQNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCLDF 535
            F  +  ++ K Y S EE   R   F+ NL  I + N +  ++++GLN+F+D S++E +R  L    QNCSA TK N+       P + DWR+ G  V+PVK+QG CGSC  F
Sbjct:   35 FQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQNCSA-TKSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTF 144          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  200 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRL-GAAQNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCLDF 535
            L F  +  ++ K Y S+EE   R   F  N   I + N    +++LGLN+F+D S++E +   L    QNCSA TKGN+       P + DWR+ G  VSPVK+QG CGSC  F
Sbjct:   33 LHFKSWMVQHQKKY-SLEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSA-TKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTF 144          
BLAST of CF509819 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  206 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQ-RHRLGAAQNCSATTKGNHKLTADVL--PETKDWRESGIVSPVKDQGHCGSCLDF 535
            FA F +++G++YES  E   R + F +NL L R           G+  F+D + EEF+ R+  GAA   +A  +    +  +V+  P   DWR  G V+ VKDQG CGSC  F
Sbjct:   38 FAEFKQKHGRVYESAAEEAFRLSVFRENLFLARLHAAANPHATFGVTPFSDLTREEFRSRYHNGAAHFAAAQERARVPVKVEVVGAPAAVDWRARGAVTAVKDQGQCGSCWAF 150          
The following BLAST results are available for this feature:
BLAST of CF509819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CATH_MOUSE2.988e-1437.50Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
RD21A_ARATH4.166e-1443.00Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSP2_DICDI5.028e-1434.15Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CYSP4_DICDI6.506e-1432.26Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CYSP5_DICDI1.105e-1334.43Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
ORYA_ORYSJ2.068e-1338.46Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSP_TRYBB3.527e-1335.65Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATH_BOVIN3.527e-1340.18Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_PIG4.606e-1341.23Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CYSP_TRYCR7.857e-1337.17Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-327 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509819 ID=CF509819; Name=CF509819; organism=Citrus sinensis; type=EST; length=570bp
CAATGCAAAACAGACACAATCATTAGGCATGGCTCGCCCTGAACATTTGG
TCTCGTCCATCATCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCA
AGCTTCGACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCG
TGACTTCGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTC
TCTCCTTTGCCCGTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGTT
GAGGAGATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAAT
CAGATCTACGAATCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGT
TTGCTGATTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCA
CAAAACTGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGT
GCTTCCAGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTA
AAGACCAAGGTCACTGTGGATCTTGCTTGGACTTTCAGCACGACTGGATC
TCTTGAGGCTGCTTACCACC
back to top