CF509824

Overview
NameCF509824
Unique NameCF509824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: FSH_DROME (Homeotic protein female sterile OS=Drosophila melanogaster GN=fs(1)h PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LGL DY+ IIK PMDLGTVK ++    YK+  EFA DVR+ F+N   YNP   DV  M  +L  +FE  +  I  E
Sbjct:  512 LGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDE 587          

HSP 2 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    4 KGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            K L L DY+ IIK PMD+GT+K RL  N Y + +E  +D    F+N  +YN  G+DV +MA+ L K+F
Sbjct:   66 KKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVF 133          
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRDT_HUMAN (Bromodomain testis-specific protein OS=Homo sapiens GN=BRDT PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 VKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            V  LGL +YY ++K+PMDLGT+K ++    YK   +FA DVR+ F N   YNP   +V  MA  L  +FE  + KI  E
Sbjct:  301 VNALGLHNYYDVVKNPMDLGTIKEKMDNQEYKDAYKFAADVRLMFMNCYKYNPPDHEVVTMARMLQDVFETHFSKIPIE 379          

HSP 2 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            L L DYYTIIK+PMDL T+K RL    Y    E  ED    FSN  LYN  G D+ +MA+ L K+F
Sbjct:   61 LQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLF 126          
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRDT_MOUSE (Bromodomain testis-specific protein OS=Mus musculus GN=Brdt PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LGL +YY ++K+PMDLGT+K ++    YK   EFA DVR+ F N   YNP   +V  MA  L  +FE  + KI  E
Sbjct:  303 LGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDE 378          

HSP 2 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            L L DYYTIIK PMDL T+K RL    Y+   E  ED    FSN  LYN  G D+ +MA+ L K+F
Sbjct:   60 LKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLF 125          
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD3_MOUSE (Bromodomain-containing protein 3 OS=Mus musculus GN=Brd3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    4 KGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            + L L DY+ IIKHPMDL TVK ++    Y   + FA D+R+ FSN   YNP   +V  MA +L  +FE  + K+  E
Sbjct:  340 EALELHDYHDIIKHPMDLSTVKRKMDSREYPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 417          
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: CBP_MOUSE (CREB-binding protein OS=Mus musculus GN=Crebbp PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSKMGRKSDF 282
            LG+ DY+ I+K+PMDL T+K +L    Y+ P ++ +DVR+ F+NA LYN K   V+    +L+++FE     +     +      GRK +F
Sbjct: 1121 LGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVRLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLGYC----CGRKYEF 1207          
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD3_HUMAN (Bromodomain-containing protein 3 OS=Homo sapiens GN=BRD3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    4 KGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            + L L DY+ IIKHPMDL TVK ++    Y   + FA DVR+ FSN   YNP   +V  MA +L  +FE  + K+  E
Sbjct:  341 EALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 418          
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: YK82_SCHPO (Bromodomain-containing protein C631.02 OS=Schizosaccharomyces pombe GN=SPAC631.02 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   13 GLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSKMGRKS 276
            G  DY+ +IKHPMDLGT++ +L+ N Y + + F  D+ + F N   +N  G  VH+M ++L  IF+  W     + +F  ++ MG  S
Sbjct:  468 GCPDYFKVIKHPMDLGTMQNKLNHNEYASMKAFEADMVLMFKNCYKFNSAGTPVHLMGKKLESIFQKLWAN---KPDFDSETYMGMSS 552          
BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: Y3800_DICDI (Ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 OS=Dictyostelium discoideum GN=DDB_G0293800 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   13 GLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFE 210
            G+ DY+ +IKHPMDLGT+K +L  N Y T ++FA DVR+ F NA+ YN     V   A+ L   F+
Sbjct:  551 GIPDYFDVIKHPMDLGTIKGKLDNNGYSTIKDFAADVRLMFENALTYNADSSPVWKHAKTLLNAFD 616          
The following BLAST results are available for this feature:
BLAST of CF509824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FSH_DROME4.548e-1348.68Homeotic protein female sterile OS=Drosophila mela... [more]
BRDT_HUMAN5.939e-1344.30Bromodomain testis-specific protein OS=Homo sapien... [more]
BRDT_MOUSE1.323e-1246.05Bromodomain testis-specific protein OS=Mus musculu... [more]
BRD3_MOUSE1.463e-1143.59Bromodomain-containing protein 3 OS=Mus musculus G... [more]
CBP_MOUSE1.911e-1136.26CREB-binding protein OS=Mus musculus GN=Crebbp PE=... [more]
BRD3_HUMAN1.911e-1144.87Bromodomain-containing protein 3 OS=Homo sapiens G... [more]
YK82_SCHPO2.495e-1136.36Bromodomain-containing protein C631.02 OS=Schizosa... [more]
Y3800_DICDI2.495e-1146.97Ankyrin repeat, bromo and BTB domain-containing pr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-332 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509824 ID=CF509824; Name=CF509824; organism=Citrus sinensis; type=EST; length=564bp
GTGAAGGGGCTTGGCCTAAAAGATTATTATACAATAATTAAGCATCCAAT
GGATCTGGGTACGGTCAAGGCTAGGTTGAGTAAAAATTTGTACAAAACTC
CTAGAGAGTTTGCGGAGGATGTGAGGATTACGTTTAGTAATGCCATGTTG
TATAACCCAAAAGGGCAGGATGTGCATATTATGGCTGAGGAGTTGTCAAA
GATATTTGAAGATACATGGAAAAAAATAGAGGCAGAGTATAATTTCAGTA
GGCAGTCGAAAATGGGTCGCAAGTCTGATTTTGCAACACCCATACCGAAA
ACTGTTCCTGCTCCTCCTCCACCAGTTCATACCCCTACACTTGCCCCTCC
TTTGCCAGTTCATTCTCCTACTTCTGCACATCCTGTGCCAGTTCATACTC
CTACACCAGTTCATACTCCACCTCCACCTTCAGGGCCTTTAGAAGCAAGG
ACTTTGGAGAGAGTAGATTCTGTGCCAATTCCTGATGATTTGAAAAGAAA
AGCTACTGATTTGGCTCATCAGGATACGATACTGGTTCCAAGAAACCTAA
GGCGAACAACCCTG
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