CF509845

Overview
NameCF509845
Unique NameCF509845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_BOVIN (40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_SHEEP (40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_CRICR (40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.857e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY ++ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.857e-21
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NCG+C PKDKAIK+F+VRNIV  AAVRD+ +A  YD Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_SCHCO (40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  100 FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 288
            F+RCSNC +C  KDKAIKRF VRN+VE AA+RD+ +A VY  Y +PKLY K+ YCVSCAIHSH
Sbjct:   20 FVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYPEYAIPKLYIKIAYCVSCAIHSH 82          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26B_SCHPO (40S ribosomal protein S26-B OS=Schizosaccharomyces pombe GN=rps26b PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.055e-21
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            KF+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ EA VY  YT+PKLY K+QYCVSCAIHS
Sbjct:   19 KFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_NEUCR (40S ribosomal protein S26E OS=Neurospora crassa GN=rps-26 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.203e-20
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH 282
            K IRCSNC +C PKDKAIKRF +RN+VE AA+RD+ +A V+  YT+PK+Y K+QYCVSCAIH
Sbjct:   19 KPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSCAIH 80          
The following BLAST results are available for this feature:
BLAST of CF509845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26_MOUSE6.381e-2272.1340S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]
RS26_MACFA6.381e-2272.1340S ribosomal protein S26 OS=Macaca fascicularis G... [more]
RS26_HUMAN6.381e-2272.1340S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]
RS26_BOVIN6.381e-2272.1340S ribosomal protein S26 OS=Bos taurus GN=RPS26 P... [more]
RS26_SHEEP1.088e-2172.1340S ribosomal protein S26 OS=Ovis aries GN=RPS26 P... [more]
RS26_CRICR1.857e-2170.4940S ribosomal protein S26 OS=Cricetus cricetus GN=... [more]
RS26_BRUPA1.857e-2172.1340S ribosomal protein S26 (Fragment) OS=Brugia pah... [more]
RS26_SCHCO3.167e-2168.2540S ribosomal protein S26 OS=Schizophyllum commune... [more]
RS26B_SCHPO7.055e-2168.2540S ribosomal protein S26-B OS=Schizosaccharomyces... [more]
RS26_NEUCR1.203e-2067.7440S ribosomal protein S26E OS=Neurospora crassa GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-353 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509845 ID=CF509845; Name=CF509845; organism=Citrus sinensis; type=EST; length=487bp
GAAACAACAAGCAGCAGCGGCGCAACAAAAACAACAACAAGATGACGTTC
AAGCGGAGGAACGGAGGAAGGAACAAGCACGGCCGTGGCCACCGTCAAGT
TCATCCGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATT
AAGAGGTTTTTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGT
TCAGGAGGCGTGTGTTTATGACGGTTACACTCTTCCTAAGTTATATGCTA
AGATGCAGTACTGCGTCTCGTGTGCGATCCACTCTCATGTGGTGAGAGTT
CGTTCCCGTACTAACAGGAGGATCCGTGAGCCCCCGCAACGCTTCAGGCG
CAGGGATGATGTCCCAAAGGCTGGTGGTGCTCTTGGTCAAGGCCCACGAG
CTGGTGGTCCAGCTGGAGCTCCAGCTGCTGCTCGTGCTTGAAAGCTTTCT
GCTGTCAGTGCTTCTGGTCCTTTGAGGCTTTTGAGAT
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