CF509845

Overview
NameCF509845
Unique NameCF509845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.053e-20
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C P DKAIK+F++RNIVE AAVRD+ E  V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.331e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            KF+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ EA VY  Y +PK+Y K+QYCVSCAIH+
Sbjct:   19 KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHA 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            K +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:   19 KPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            K +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:   19 KPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.280e-18
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  100 FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD--GYTLPKLYAKMQYCVSCAIHSH 288
            +IRC+NC +C PKDKA+KRF +R IVE AAV+D+ +  V++  GY  P+ Y K QYC+SCAIHSH
Sbjct:   20 YIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYCISCAIHSH 84          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_OXYNO (40S ribosomal protein S26 OS=Oxytricha nova GN=RPS26 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY--DGYTLPKLYAKMQYCVSCAIHS 285
            +RC+NCG+   KDKAIKRF  RN+V+ ++ RD+QE   Y    +T+PK+Y K+ YCVSCAIH+
Sbjct:   21 VRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHA 83          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_ENCCU (40S ribosomal protein S26 OS=Encephalitozoon cuniculi GN=RPS26 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            I+C  CG   PKDKAIKRF +++++EQA+  D+++A +YD + +P++  K Q+CVSCA H+
Sbjct:   18 IQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSCACHA 78          
The following BLAST results are available for this feature:
BLAST of CF509845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26L_HUMAN2.053e-2068.85Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS26A_SCHPO1.331e-1963.4940S ribosomal protein S26-A OS=Schizosaccharomyces... [more]
RS26B_YEAST3.277e-1866.6740S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26A_YEAST3.277e-1866.6740S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26_DICDI4.280e-1858.4640S ribosomal protein S26 OS=Dictyostelium discoid... [more]
RS26_OXYNO1.683e-1453.9740S ribosomal protein S26 OS=Oxytricha nova GN=RPS... [more]
RS26_ENCCU5.415e-1347.5440S ribosomal protein S26 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-353 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509845 ID=CF509845; Name=CF509845; organism=Citrus sinensis; type=EST; length=487bp
GAAACAACAAGCAGCAGCGGCGCAACAAAAACAACAACAAGATGACGTTC
AAGCGGAGGAACGGAGGAAGGAACAAGCACGGCCGTGGCCACCGTCAAGT
TCATCCGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATT
AAGAGGTTTTTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGT
TCAGGAGGCGTGTGTTTATGACGGTTACACTCTTCCTAAGTTATATGCTA
AGATGCAGTACTGCGTCTCGTGTGCGATCCACTCTCATGTGGTGAGAGTT
CGTTCCCGTACTAACAGGAGGATCCGTGAGCCCCCGCAACGCTTCAGGCG
CAGGGATGATGTCCCAAAGGCTGGTGGTGCTCTTGGTCAAGGCCCACGAG
CTGGTGGTCCAGCTGGAGCTCCAGCTGCTGCTCGTGCTTGAAAGCTTTCT
GCTGTCAGTGCTTCTGGTCCTTTGAGGCTTTTGAGAT
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