CF509847

Overview
NameCF509847
Unique NameCF509847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_SCHPO (Vacuolar protein sorting-associated protein 29 OS=Schizosaccharomyces pombe GN=vps29 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIP 432
            IGD HIP RA  L +KF+ +L+PGKI  IIC GNL+   V++YLK +C DL + +G +D  S+ P    +T+G FK+G  +GH V+P
Sbjct:    6 IGDFHIPDRAPKLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVP 92
The following BLAST results are available for this feature:
BLAST of CF509847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VPS29_SCHPO4.907e-2048.28Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-355 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509847 ID=CF509847; Name=CF509847; organism=Citrus sinensis; type=EST; length=451bp
GCGCTATGATCTACGAACTTAACTAAGAAGCCTTGCATCCTTACTTCAGC
CGGTTGCTAATTACCAATTGCTCTTGTTCCTTAAACTAATCAGACAAGAA
CAGATTATGGTGATGGGTCAATATTAAGAGAGAGGTTGCTTATTTTGTTG
AAGATGGTGTTAGTATTAGCAATCGGAGACCTTCACATTCCTCACCGTGC
ATCTGACCTGCCCCAAAAGTTCAAATCTATGCTCGTTCCTGGAAAAATTC
AGCACATCATTTGTACTGGCAATCTCTCTATCAAAGAAGTCCATGATTAT
TTGAAGAGTCTTTGTCCTGATTTGCATGTCACTCGAGGTGAATATGATGA
AGATTCACGTTATCCCGAAACTAAGACACTCACCATTGGGCAATTCAAGC
TTGGAATCTGCCATGGTCATCAGGTTATTCCATGGGGGGACTTGGATTCG
C
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