CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: SELO_MOUSE (Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 4.522e-46
Identity = 100/176 (56.82%), Postives = 117/176 (66.48%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFER--PDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            AC+++  P A +  P+LVA SE     L L+  E      +  LFFSG   L G  P A CY GHQFG +AGQLGDG A+ LGE+     ERWELQLKGAG TP+SR ADG  VLRSSIREFLCSEAM  LGIPTTRA   VT+   V RD+FYDGNPK E   +V R+A +F+RF
Sbjct:   81 ACFSRARP-APLRRPRLVALSEPALALLGLEASEEAEVEAEAALFFSGNALLPGTEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSESTVMRDVFYDGNPKYEKCTVVLRIAPTFIRF 255          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1944_BURCJ (UPF0061 protein BceJ2315_19440 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=BceJ2315_19440 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.757e-42
Identity = 90/170 (52.94%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLAAPYVVGFSDEVAQLLDLPPTLAAQPGFAELFTGNPTRDWPANAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETAAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y6171_BURCA (UPF0061 protein Bcen_6171 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_6171 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.825e-42
Identity = 90/170 (52.94%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETAAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1908_BURCH (UPF0061 protein Bcen2424_1908 OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_1908 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.825e-42
Identity = 90/170 (52.94%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETAAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1931_BURCC (UPF0061 protein Bcenmc03_1931 OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_1931 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.153e-41
Identity = 90/170 (52.94%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPAIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETAAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: SELO_DANRE (Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.505e-41
Identity = 93/186 (50.00%), Postives = 122/186 (65.59%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKE-FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE-----------RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            +C+++V P+  ++NP+ VA S      L LD +E  + P  P + SG+  + G+ P A CY GHQFG +AGQLGDG A  LGE+     +           RWE+Q+KGAG TPYSR ADG  VLRSSIREFLCSEA+  LG+PTTRA  +VT+   V RD+FYDGNP+ E  ++V R+A SF+RF
Sbjct:   70 SCFSRVQPTP-LKNPEFVAVSAPALALLGLDAEEVLKDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLRENPTGRWEIQVKGAGLTPYSRQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCSVVLRIAPSFIRF 254          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y5209_BURS3 (UPF0061 protein Bcep18194_A5209 OS=Burkholderia sp. (strain 383) GN=Bcep18194_A5209 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.568e-41
Identity = 90/170 (52.94%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S  VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE       R+ELQLKG+G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLAAPYVVGFSGEVAQLLDLPPSIAAQPGFAELFAGNPTRDWPANAMPYASVYSGHQFGVWAGQLGDGRALTIGERTGTDGRRYELQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETSAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1924_BURPP (UPF0061 protein Bphyt_1924 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_1924 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.274e-40
Identity = 93/170 (54.71%), Postives = 113/170 (66.47%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P LV +S   A  L L+P     P F   FSG       A A+PYA  Y GHQFG+WAGQLGDGRA+ LGE+ +   +R+ELQLKGAG+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRALC++ + + V R+         E  A+V RVA SF+RF
Sbjct:   41 PAAPLSAPYLVGFSAETAALLGLEPGLENDPGFAELFSGNLTREWPAEALPYASVYSGHQFGVWAGQLGDGRALGLGEVEH-NGQRFELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALCVIGSDQPVRRETV-------ETAAVVTRVAPSFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y5674_BURM9 (UPF0061 protein BMA10229_A3374 OS=Burkholderia mallei (strain NCTC 10229) GN=BMA10229_A3374 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.664e-40
Identity = 91/177 (51.41%), Postives = 116/177 (65.54%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RVAQSF+RF
Sbjct:   34 AAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIGSDQPVVRE-------EIETSAVVTRVAQSFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2457_BURP1 (UPF0061 protein BURPS1710b_2457 OS=Burkholderia pseudomallei (strain 1710b) GN=BURPS1710b_2457 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.664e-40
Identity = 91/177 (51.41%), Postives = 116/177 (65.54%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RVAQSF+RF
Sbjct:   34 AAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIGSDQPVVRE-------EIETSAVVTRVAQSFVRF 202          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
SELO_MOUSE4.522e-4656.82Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3[more]
Y1944_BURCJ6.757e-4252.94UPF0061 protein BceJ2315_19440 OS=Burkholderia cep... [more]
Y6171_BURCA8.825e-4252.94UPF0061 protein Bcen_6171 OS=Burkholderia cenocepa... [more]
Y1908_BURCH8.825e-4252.94UPF0061 protein Bcen2424_1908 OS=Burkholderia ceno... [more]
Y1931_BURCC1.153e-4152.94UPF0061 protein Bcenmc03_1931 OS=Burkholderia ceno... [more]
SELO_DANRE1.505e-4150.00Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2[more]
Y5209_BURS32.568e-4152.94UPF0061 protein Bcep18194_A5209 OS=Burkholderia sp... [more]
Y1924_BURPP1.274e-4054.71UPF0061 protein Bphyt_1924 OS=Burkholderia phytofi... [more]
Y5674_BURM91.664e-4051.41UPF0061 protein BMA10229_A3374 OS=Burkholderia mal... [more]
Y2457_BURP11.664e-4051.41UPF0061 protein BURPS1710b_2457 OS=Burkholderia ps... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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