CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1828_CORGB (UPF0061 protein cgR_1828 OS=Corynebacterium glutamicum (strain R) GN=cgR_1828 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.255e-29
Identity = 70/163 (42.94%), Postives = 96/163 (58.90%), Query Frame = 3
Query:   36 EVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            E  NP+LV  ++ +A SL LDP     P+   F  G  P       AQ Y GHQFG +   LGDGRA+ LGE  +      ++ LKG+G+T +SR ADG AVL   +RE++ SEAMH LG+PTTR+L +++TG+ + R           PGA++ RVA S +R
Sbjct:   27 ESPNPELVILNDDLAYSLGLDPTWLRTPEGVQFLLGRNPEPLTKAVAQAYSGHQFGQFVASLGDGRALLLGEARSADGVLHDIHLKGSGRTQFSRGADGRAVLGPVLREYIISEAMHALGVPTTRSLAVISTGRKIQRG-------SVAPGAVLVRVATSLIR 182          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1769_VIBF1 (UPF0061 protein VF_1769 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=VF_1769 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.255e-29
Identity = 74/172 (43.02%), Postives = 103/172 (59.88%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            +T V P+  ++N + + W+  +A   +L        +    FSG T  +   P A  Y GHQFG +   LGDGR + L EI + K   ++L LKGAG TPYSR  DG AVLRS+IRE+LCSEAM  LGIPTTRAL ++T+   V R+ +       E GA++ R+A++ +RF
Sbjct:   21 FTYVQPTP-LDNSRWLIWNSELAKQFDLPENVHNHSELLDAFSGETVPSVFSPLAMKYAGHQFGCYNPDLGDGRGLLLAEIKDKKGNSFDLHLKGAGLTPYSRSGDGRAVLRSTIREYLCSEAMAGLGIPTTRALGMMTSDTPVFREGY-------ETGALLIRMAETHIRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y678_PELUB (UPF0061 protein SAR11_0678 OS=Pelagibacter ubique GN=SAR11_0678 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.846e-29
Identity = 73/168 (43.45%), Postives = 102/168 (60.71%), Query Frame = 3
Query:   21 VSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            ++P A V  P+++  ++ +A+ L+LD       D    FSG     G+   AQ Y GHQFG +   LGDGRA+ +GE L   +ER+++Q KG+G+TP+SR  DG AVL   +RE++ SEAMHFL IPTTR+L +V TG+ V R+           GAI+ RVA   LR
Sbjct:   22 INPVA-VNAPEILILNKDLANKLDLDFSNINDDDLSKIFSGNLLPEGSNSIAQAYAGHQFGHFT-MLGDGRAVLIGEHLTKNNERFDIQFKGSGRTPFSRSGDGRAVLGPMLREYIISEAMHFLKIPTTRSLAVVKTGEDVVREQI-------SQGAILTRVALGHLR 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y4156_SHEB9 (UPF0061 protein Sbal195_4156 OS=Shewanella baltica (strain OS195) GN=Sbal195_4156 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.846e-29
Identity = 75/172 (43.60%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            Y++V P   +  P+ +AWS+  A  + L     E     L  SG T + GA  YAQ Y GHQFG +  +LGDGR+I LGE +      W++ LKG G TPYSR  DG AV+RS++REFL SEA+H L +PTTRAL ++ +   V R+        +E  AI  R+A+S +RF
Sbjct:   15 YSQVYPQG-ITKPEWLAWSDDAAQLIGLSQPTDE---LLLGLSGNTAVDGATYYAQVYSGHQFGGYTPRLGDGRSIILGEAIGPNGV-WDVALKGGGPTPYSRRGDGRAVMRSAVREFLVSEALHHLHVPTTRALAVIGSDLPVWRE-------SQETAAITVRLARSHIRF 174          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y3154_MYCPA (UPF0061 protein MAP_3154 OS=Mycobacterium paratuberculosis GN=MAP_3154 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.846e-29
Identity = 70/158 (44.30%), Postives = 97/158 (61.39%), Query Frame = 3
Query:   51 QLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            +L+  +E +A  L LD      PD   F +G     GA P AQ Y GHQFG +  +LGDGRA+ LGE+++ K    ++ LKG+G TP++R  DGLA +   +RE++ SEAMH LG+PTTR+L +V TG+ V R+          PGA++ RVA S LR
Sbjct:   35 RLLVLNEPLATQLGLDTGWLRGPDGLRFLTGNLVPTGAAPVAQAYSGHQFGGFVPRLGDGRALLLGELVDNKGRLRDIHLKGSGATPFARGGDGLAAVGPMLREYVVSEAMHALGVPTTRSLAVVGTGRPVYREATL-------PGAVLARVASSHLR 185          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1236_CLOB6 (UPF0061 protein CLJ_B1236 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=CLJ_B1236 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.846e-29
Identity = 75/171 (43.86%), Postives = 105/171 (61.40%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            +T+ SPS  V +P+L   +  +  SL L+ +  +  D     +G      A+P AQ Y GHQF  +   LGDGRA+ LGE +    +R+++QLKG+GKTPYSR  DG A L   +RE++ SEAM+ LGIPTTR+L +VTTG+ + R+        E PGAI+ RVA S +R
Sbjct:   26 FTRQSPS-RVPSPKLAVLNYPLITSLGLNAQVLQSADGVDILAGNKIPEEAIPIAQAYAGHQFAHFT-MLGDGRALLLGEHITPLGDRFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAVVTTGELIMRE-------AELPGAILTRVAASHIR 187          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1896_VIBFM (UPF0061 protein VFMJ11_1896 OS=Vibrio fischeri (strain MJ11) GN=VFMJ11_1896 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.023e-29
Identity = 73/172 (42.44%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            +T V P+  ++N + + W+  +A   +L        +    FSG    +   P A  Y GHQFG +   LGDGR + L EI + K   ++L LKGAG TPYSR  DG AVLRS+IRE+LCSEAM  LGIPTTRAL ++T+   V R+ +       E GA++ R+A++ +RF
Sbjct:   21 FTYVQPTP-LDNSRWLIWNSELAKQFDLPENVHNHSELLDAFSGEVVPSVFAPLAMKYAGHQFGSYNPDLGDGRGLLLAEIKDKKGNSFDLHLKGAGLTPYSRSGDGRAVLRSTIREYLCSEAMAGLGIPTTRALGMMTSDTPVFREGY-------ETGALLIRMAETHIRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y926_SILST (UPF0061 protein TM1040_0926 OS=Silicibacter sp. (strain TM1040) GN=TM1040_0926 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.560e-29
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            YT+ +P+  V+ P+L+A+++++A  L +        +    F G     GA P AQ Y GHQFG +  QLGDGRA+ LGE++     R ++QLKG+G TPYSR  DG A L   +RE++ SEAMH LGIPTTRAL  V TG+ V R+          PGA++ RVA S LR
Sbjct:   19 YTRQAPTP-VKAPRLLAFNDALATLLGI--ARGTDAELAQVFGGNELPEGADPLAQLYAGHQFGTYNPQLGDGRAVLLGEVVGTDGLRRDIQLKGSGPTPYSRRGDGRAWLGPVLREYVVSEAMHALGIPTTRALAAVETGETVWRE-------GGLPGAVLTRVASSHLR 179          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y4063_SHEB5 (UPF0061 protein Sbal_4063 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=Sbal_4063 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.568e-29
Identity = 74/172 (43.02%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            Y++V P   +  P+ +AWS+  A  + L     E     L  SG   + GA  YAQ Y GHQFG +  +LGDGR+I LGE +   +  W++ LKG G TPYSR  DG AV+RS++REFL SEA+H L +PTTRAL ++ +   V R+        +E  AI  R+A+S +RF
Sbjct:   15 YSQVYPQG-ITKPEWLAWSDDAAQLIGLSQPTDE---LLLGLSGNAAVDGATYYAQVYSGHQFGGYTPRLGDGRSIILGEAIG-PNGAWDVALKGGGPTPYSRRGDGRAVMRSAVREFLVSEALHHLHVPTTRALAVIGSDLPVWRE-------SQETAAITVRLARSHIRF 174          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y4038_SHEB8 (UPF0061 protein Shew185_4038 OS=Shewanella baltica (strain OS185) GN=Shew185_4038 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.568e-29
Identity = 74/172 (43.02%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            Y++V P   +  P+ +AWS+  A  + L     E     L  SG   + GA  YAQ Y GHQFG +  +LGDGR+I LGE +   +  W++ LKG G TPYSR  DG AV+RS++REFL SEA+H L +PTTRAL ++ +   V R+        +E  AI  R+A+S +RF
Sbjct:   15 YSQVYPQG-ITKPEWLAWSDDAAQLIGLSQPTDE---LLLGLSGNAAVDGATYYAQVYSGHQFGGYTPRLGDGRSIILGEAIG-PNGAWDVALKGGGPTPYSRRGDGRAVMRSAVREFLVSEALHHLHVPTTRALAVIGSDLPVWRE-------SQETAAITVRLARSHIRF 174          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y1828_CORGB2.255e-2942.94UPF0061 protein cgR_1828 OS=Corynebacterium glutam... [more]
Y1769_VIBF12.255e-2943.02UPF0061 protein VF_1769 OS=Vibrio fischeri (strain... [more]
Y678_PELUB3.846e-2943.45UPF0061 protein SAR11_0678 OS=Pelagibacter ubique ... [more]
Y4156_SHEB93.846e-2943.60UPF0061 protein Sbal195_4156 OS=Shewanella baltica... [more]
Y3154_MYCPA3.846e-2944.30UPF0061 protein MAP_3154 OS=Mycobacterium paratube... [more]
Y1236_CLOB63.846e-2943.86UPF0061 protein CLJ_B1236 OS=Clostridium botulinum... [more]
Y1896_VIBFM5.023e-2942.44UPF0061 protein VFMJ11_1896 OS=Vibrio fischeri (st... [more]
Y926_SILST6.560e-2945.03UPF0061 protein TM1040_0926 OS=Silicibacter sp. (s... [more]
Y4063_SHEB58.568e-2943.02UPF0061 protein Sbal_4063 OS=Shewanella baltica (s... [more]
Y4038_SHEB88.568e-2943.02UPF0061 protein Shew185_4038 OS=Shewanella baltica... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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