CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1931_VIBCH (UPF0061 protein VC_1931 OS=Vibrio cholerae GN=VC_1931 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.110e-27
Identity = 75/174 (43.10%), Postives = 101/174 (58.05%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT V P   ++N +   W+  +A    L   E    +  L  SG    A   P A  Y GHQFG++   LGDGR + L E+   + E +++ LKGAG TPYSR  DG AVLRSS+RE+LCSEAM  LGI TTRAL L+++   V R+       +EE GA++ R+A + +RF
Sbjct:   19 AFYTPVHPQP-LQNVRWGMWNSRLAQQFGLP--EAPNDELLLSLSGQQLPADFSPVAMKYAGHQFGVYNPDLGDGRGLLLAEMATKQGEVFDIHLKGAGLTPYSRMGDGRAVLRSSLREYLCSEAMAGLGIATTRALALMSSETPVYRE-------REERGALLVRLAHTHVRF 182          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2210_ALISL (UPF0061 protein VSAL_I2210 OS=Aliivibrio salmonicida (strain LFI1238) GN=VSAL_I2210 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.140e-27
Identity = 70/167 (41.92%), Postives = 94/167 (56.29%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P   + N   + W+E +A    L        +    FSG        P A  Y GHQFG +   LGDGR + L EI +     +++ LKGAG+TPYSR  DG AVLRS+IRE+LCSEAM  LGIPTTRAL ++ +   V R+ +       E GA++ RVA++ +RF
Sbjct:   25 PPQPLNNVHWIMWNEKLAKRFNLPLDPAADAELLSGFSGEVVPPQFSPLAMKYAGHQFGSYNPDLGDGRGLLLAEIKDKAGASFDIHLKGAGRTPYSRSGDGRAVLRSTIREYLCSEAMFGLGIPTTRALGMMGSDTPVYREGY-------ETGALLLRVAETHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y3122_SHEDO (UPF0061 protein Sden_3122 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=Sden_3122 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.047e-26
Identity = 74/171 (43.27%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            Y    P A V +PQL+A +  + ++LE D   F   D     SG T     +P+A  Y GHQFG W+  LGDGRA  LG++     E  ++QLKG+G TP+SR  DG A L + IRE+L SEAM  L I TT +L ++ TG+ V R+  Y       PGAI+ R A+S LR
Sbjct:   26 YRDSLPEAAV-SPQLLALNTRLLETLEQDLAWFNSSDALEQLSGKTYYGSNLPFALAYSGHQFGGWSPVLGDGRAHVLGQLKTAADELIDVQLKGSGATPFSRGGDGRATLGAVIREYLLSEAMAGLNISTTGSLAVIATGEDVWRNGAY-------PGAILVRTAKSHLR 188          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y407_SHEFN (UPF0061 protein Sfri_0407 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_0407 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.787e-26
Identity = 72/174 (41.38%), Postives = 102/174 (58.62%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLA--GAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            Y++V P   + NP  + WS+  A  + L     E+P+  L    +   A  GA  YAQ Y GHQFG +  +LGDGR+I LGE +   +  W++ LKG G TPYSR  DG AV+RS++REFL SEA+  L +PT+RAL ++ +   V R+        +E  AI  R+A+S +RF
Sbjct:   15 YSQVYP-LPISNPHWLGWSDDAAQLIGL-----EKPNAELLMQLSANYAAPGASYYAQVYSGHQFGGYTPRLGDGRSIILGEAIG-PNGAWDVALKGGGPTPYSRQGDGRAVMRSAVREFLVSEALAALNVPTSRALAVIGSDLPVWRE-------SQETAAITVRLAKSHIRF 174          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2019_THICR (UPF0061 protein Tcr_2019 OS=Thiomicrospira crunogena (strain XCL-2) GN=Tcr_2019 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.047e-26
Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLA----GAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            Y  V P  + +N +LV  + S+ D L  D  + +     L     T  +      +P AQ Y GHQFG +   LGDGR + LG+  +  ++ WE  LKGAG+TP+SR  DG AVLRS IRE+L SEA+H LG+PTTRAL + ++ + V R++F       EP A + RV  + +RF
Sbjct:   14 YELVLPEPQ-QNARLVTVNHSLMDELNCDLSDKQL--LALASGNLTDESLINFNLIPLAQKYTGHQFGYYNPDLGDGRGLLLGQWHDKNNQAWEFHLKGAGRTPFSRRGDGRAVLRSVIREYLASEALHGLGVPTTRALAIASSQEQVQREIF-------EPRASLIRVTPTHIRF 179          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2651_EXISA (UPF0061 protein EAT1b_2651 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=EAT1b_2651 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.867e-26
Identity = 73/166 (43.98%), Postives = 99/166 (59.64%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            P   V+NP LV +++++A SL LD +  ++    L  +  T  +    ++Q Y GHQFG     LGDGRA+ LGE +    +R ++QLKG+G T YSR  DG A L   +REF+ SEAMH LGIPT RAL ++ TG+ + R       PK   GAI+ RVA S LR
Sbjct:   23 PIHPVDNPTLVLFNDALAASLGLDAQSLKQDIDLLAGNRQTETS----FSQAYAGHQFGNLT-MLGDGRALMLGEHVTPNGKRVDVQLKGSGPTEYSRGGDGRAALGPMVREFIISEAMHALGIPTNRALAVIQTGEAIMRQ-----GPKH--GAILTRVASSHLR 176          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y182_PSEHT (UPF0061 protein PSHAa0182 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=PSHAa0182 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.580e-25
Identity = 71/164 (43.29%), Postives = 100/164 (60.98%), Query Frame = 3
Query:   33 AEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            ++V  PQL+ W++S+A +  ++     R      FSG    A A   A  Y GHQFG ++ +LGDGRA  LG + + +++ W++QLKG+G TPYSR  DG   L  +IRE++ SEAM  LGI TTR L +V +G+ V R      NP  +PGAIV R+A S +R
Sbjct:   21 SKVAAPQLLLWNDSLAKAFNINVVPELRAST---FSGNEQQAIAA-VALGYSGHQFGHFSPRLGDGRAHLLGAVEDAQNQLWDIQLKGSGATPYSRGGDGRCALGPAIREYIMSEAMQALGIKTTRCLAVVGSGETVYR------NP-PQPGAIVTRLASSHIR 173          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: FMP40_YEAST (UPF0061 protein FMP40 OS=Saccharomyces cerevisiae GN=FMP40 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.369e-25
Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  168 PYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWE-LQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRA--LCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            PY+  Y G QFG +A QLGDGR + L ++ +  S +W+  QLKGAG TP+SRFADG AVLRSSIREF+ SEA+H +GIP+TRA  L L+   K   R+        +EP A+VCR A S++R
Sbjct:  114 PYSTVYSGFQFGSFAAQLGDGRVVNLFDLKDKCSGQWQTFQLKGAGMTPFSRFADGKAVLRSSIREFIMSEALHSIGIPSTRAMQLTLLPGTKAQRRN--------QEPCAVVCRFAPSWIR 227          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2120_MARMS (UPF0061 protein Mmwyl1_2120 OS=Marinomonas sp. (strain MWYL1) GN=Mmwyl1_2120 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.747e-25
Identity = 75/177 (42.37%), Postives = 102/177 (57.63%), Query Frame = 3
Query:    3 HACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYA--QCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            HA  +K      +E  +LV +++S+A  L +D K  E        SG      A+PY+    Y GHQFG ++ QLGDGR + LGE+       ++L +KGAG TPYSR  DG AVLRS IRE+L SEAM  L +P++RAL L     + +R+  Y   P  E GA++ RVAQ  +RF
Sbjct:   12 HAFSSKTHVQPLIEQ-RLVEFNQSLASFLSIDIKSTETK---CILSGEE----ALPYSLSMVYAGHQFGGFSPQLGDGRGVLLGEVRGQDGLLYDLHMKGAGPTPYSRRGDGRAVLRSCIREYLASEAMTALSVPSSRALAL-----YDSREAVYRETP--EAGAMLLRVAQGHIRF 173          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YU61_VIBMA (UPF0061 protein ORF18 OS=Vibrio marinus PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.175e-23
Identity = 78/194 (40.21%), Postives = 105/194 (54.12%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGA------VPYAQCYGGHQFGMWAGQ---------LGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL-VTTGKFVTRDMFYDGNPKEEPG-------AIVCRVAQSFLR 524
            Y  V P+  +++P+ VA S+++   L       E  DF   FSG   ++G       V +A  Y    +G    Q          GDGRAI++ E L +K +RWE+QLKG G+TPY R ADG AVLRSSIREFL  + MH LG+PT+R+L L V+  + V R  +  G+  E P        AI  RVA SF+R
Sbjct:   19 YVPVKPTP-IKDPEYVAHSKNLFSELGFADSMAESADFVRMFSG--DMSGVPVPMRQVGWASGYALSIYGTEYTQQCPFQTGNGYGDGRAISVLETL-IKGQRWEMQLKGGGRTPYCRGADGRAVLRSSIREFLAQDHMHALGVPTSRSLSLYVSKTETVKRPWYSQGSRSENPDMLISEAVAISTRVAPSFIR 208          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y1931_VIBCH2.110e-2743.10UPF0061 protein VC_1931 OS=Vibrio cholerae GN=VC_1... [more]
Y2210_ALISL6.140e-2741.92UPF0061 protein VSAL_I2210 OS=Aliivibrio salmonici... [more]
Y3122_SHEDO1.047e-2643.27UPF0061 protein Sden_3122 OS=Shewanella denitrific... [more]
Y407_SHEFN1.787e-2641.38UPF0061 protein Sfri_0407 OS=Shewanella frigidimar... [more]
Y2019_THICR3.047e-2640.91UPF0061 protein Tcr_2019 OS=Thiomicrospira crunoge... [more]
Y2651_EXISA8.867e-2643.98UPF0061 protein EAT1b_2651 OS=Exiguobacterium sp. ... [more]
Y182_PSEHT2.580e-2543.29UPF0061 protein PSHAa0182 OS=Pseudoalteromonas hal... [more]
FMP40_YEAST3.369e-2552.46UPF0061 protein FMP40 OS=Saccharomyces cerevisiae ... [more]
Y2120_MARMS5.747e-2542.37UPF0061 protein Mmwyl1_2120 OS=Marinomonas sp. (st... [more]
YU61_VIBMA9.175e-2340.21UPF0061 protein ORF18 OS=Vibrio marinus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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