CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y5734_NOSP7 (UPF0061 protein Npun_F5734 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F5734 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.262e-20
Identity = 59/170 (34.71%), Postives = 92/170 (54.12%), Query Frame = 3
Query:   33 AEVENPQ-LVAW-SESVADSLELDPKEFERPDFPLFFS---GATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A  E PQ ++ W ++++   L LDP+  +  DF   F    G  PL      A  Y G+QFG + GQLGDGR    G++     E ++   KG+G+TPYSR  DG+  L+  +RE L +EA+H LG+ T+R L ++ TG      ++    P     +++ R++ S +RF
Sbjct:   37 AAAEFPQHILRWRNDALLPRLGLDPQVVKDEDFITAFGQFQGRKPLL-----ALRYHGYQFGEYNGQLGDGRGFLYGQVRATDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHHLGVRTSRCLTMIETG----LPLWRGDEPSPTRSSVMIRMSSSHIRF 197          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1028_ANAVT (UPF0061 protein Ava_1028 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1028 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.050e-18
Identity = 58/167 (34.73%), Postives = 88/167 (52.69%), Query Frame = 3
Query:   42 ENPQL-VAW-SESVADSLELDPKEFERPDFPL---FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            E PQL + W ++++   L LDP+     DF      F G  PL      A  Y G+QFG +   LGDGR    G++     E ++   KG+G+TPYSR  DG+  L+  +RE L +EA+H LG+ T+R L ++ TG  + R       P     +++ R+ +S +RF
Sbjct:   40 EFPQLTLRWRNDAILPRLGLDPQTVTDEDFITAFGLFQGRKPLL-----ALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETGLGLWR----GDEPSPTRSSVMVRMNKSHIRF 197          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y596_GLOVI (UPF0061 protein gll0596 OS=Gloeobacter violaceus GN=gll0596 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.371e-18
Identity = 57/154 (37.01%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   69 ESVADSLELDPKEFERPDFPLFFSGATPLAGAVPY-AQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            + V   L LDP       F   F      AG  P+ A  Y G+QFG +   LGDGR    G++  L  E ++   KG+G TPYSR  DG   L+  +RE L SEA+H LG+ T+R+L L+ TG+ + R       P     A++ R ++S +RF
Sbjct:   51 DGVLRLLGLDPATVGEEHFIEAFGR---FAGRGPFLAMRYHGYQFGEYNPYLGDGRGFLYGQVRGLDGELYDFGTKGSGTTPYSRGGDGRLTLKGGVREVLASEALHHLGVRTSRSLSLIETGEALWR----GDEPSPTRSAVLVRTSRSHVRF 197          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2876_ANASP (UPF0061 protein all2876 OS=Anabaena sp. (strain PCC 7120) GN=all2876 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 57/167 (34.13%), Postives = 88/167 (52.69%), Query Frame = 3
Query:   42 ENPQL-VAW-SESVADSLELDPKEFERPDFPL---FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            E PQL + W ++++   L L+P+     DF      F G  PL      A  Y G+QFG +   LGDGR    G++     E ++   KG+G+TPYSR  DG+  L+  +RE L +EA+H LG+ T+R L ++ TG  + R       P     +++ R+ +S +RF
Sbjct:   40 EFPQLTLRWRNDAILPRLGLNPQIVTDEDFITAFGLFQGRKPLL-----ALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETGLGLWR----GDEPSPTRSSVMVRMNKSHIRF 197          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1633_THEEB (UPF0061 protein tll1633 OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1633 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 3
Query:   66 SESVADSLELDPKEFERPDFPLFFSGATPLAGAVPY-AQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            ++++   + LDP E    DF   F       G  P+ A  Y G+QFG +   LGDGR    G+   +  + ++L  KG+G TPYSR  DG   L+  +RE L SE +H LG+ T R+L LV TG+ + R       P     +++ R+ +S +RF
Sbjct:   40 NDALLPLMGLDPAEVTDADFIAAFG---QFQGREPFLAMRYHGYQFGEYNPHLGDGRGFLYGQFRGVDGQLYDLGTKGSGTTPYSRGGDGRLTLKGGVREVLASELLHRLGVRTFRSLSLVETGESLWR----GDEPSPTRSSVLVRLGRSHIRF 187          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YZ64_SYNY3 (UPF0061 protein sll1464 OS=Synechocystis sp. (strain PCC 6803) GN=sll1464 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 52/148 (35.14%), Postives = 79/148 (53.38%), Query Frame = 3
Query:   87 LELDPKEFERPDFPLFFSGATPLAGAVPY-AQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            L L+P + +  +F   F       G  P+ A  Y G+QFG +   LGDGR    G++  +  E ++   KG+G+TPYSR  DG   L+  +RE L +EA+H LG+ T+R L LV TG  + R       P     +++ R ++S +RF
Sbjct:   46 LGLEPSQVKDDNFVEAFG---LFHGVRPFLALRYHGYQFGEYNPNLGDGRGFLYGQVRGVNGELFDFGTKGSGQTPYSRGGDGRLTLKGGVREVLAAEALHRLGVKTSRCLSLVETGDSLWR----GDEPSPTRASVMIRFSRSHIRF 186          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1476_TRIEI (UPF0061 protein Tery_1476 OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_1476 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  183 YGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            Y G+QFG +   LGDGR    G++  +  E ++   KG+G+TPYSR ADG   L+  +RE L +E +H  G+ T+R L L+ TG+ + R       P     +++ R ++S +RF
Sbjct:   76 YHGYQFGEYNPYLGDGRGFLYGQVRGVDDELYDFGTKGSGRTPYSRSADGRLTLKGGVREVLAAEILHRHGVRTSRCLSLIETGEGLWR----GDEPSPTRSSVMVRFSRSHIRF 186          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y041_SYNP6 (UPF0061 protein syc0041_c OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0041_c PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  135 FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            F G +PL      A  Y G+QFG+++  LGDGR    G++       ++   KG+G+TPYSR  DG   L+  +RE L SE +  LG+ T R L L+ TG+    +++    P     +++ R  ++ +RF
Sbjct:   67 FQGRSPLL-----AMRYHGYQFGIYSPDLGDGRGFLYGQVRGRNGWLYDFGTKGSGRTPYSRGGDGKPTLKGGVREVLASEFLQRLGVRTGRCLSLIETGE----ELWRGDEPSPTRSSVMVRFNRTHIRF 188          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1584_SYNE7 (UPF0061 protein Synpcc7942_1584 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1584 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.197e-15
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  135 FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            F G +PL      A  Y G+QFG++   LGDGR    G++       ++   KG+G+TPYSR  DG   L+  +RE L SE +  LG+ T R L L+ TG+    +++    P     +++ R  ++ +RF
Sbjct:   67 FQGRSPLL-----AMRYHGYQFGIYNPDLGDGRGFLYGQVRGRNGWLYDFGTKGSGRTPYSRGGDGKLTLKGGVREVLASEFLQRLGVRTGRCLSLIETGE----ELWRGDEPSPTRSSVMVRFNRTHIRF 188          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y5734_NOSP74.262e-2034.71UPF0061 protein Npun_F5734 OS=Nostoc punctiforme (... [more]
Y1028_ANAVT1.050e-1834.73UPF0061 protein Ava_1028 OS=Anabaena variabilis (s... [more]
Y596_GLOVI1.371e-1837.01UPF0061 protein gll0596 OS=Gloeobacter violaceus G... [more]
Y2876_ANASP6.805e-1834.13UPF0061 protein all2876 OS=Anabaena sp. (strain PC... [more]
Y1633_THEEB6.805e-1834.84UPF0061 protein tll1633 OS=Thermosynechococcus elo... [more]
YZ64_SYNY35.760e-1735.14UPF0061 protein sll1464 OS=Synechocystis sp. (stra... [more]
Y1476_TRIEI6.369e-1636.52UPF0061 protein Tery_1476 OS=Trichodesmium erythra... [more]
Y041_SYNP64.128e-1533.59UPF0061 protein syc0041_c OS=Synechococcus sp. (st... [more]
Y1584_SYNE79.197e-1533.59UPF0061 protein Synpcc7942_1584 OS=Synechococcus e... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
back to top