CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2336_BURP0 (UPF0061 protein BURPS1106A_2336 OS=Burkholderia pseudomallei (strain 1106a) GN=BURPS1106A_2336 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.664e-40
Identity = 91/177 (51.41%), Postives = 116/177 (65.54%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RVAQSF+RF
Sbjct:   34 AAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIGSDQPVVRE-------EIETSAVVTRVAQSFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1440_BURMA (UPF0061 protein BMA1440 OS=Burkholderia mallei GN=BMA1440 PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.664e-40
Identity = 91/177 (51.41%), Postives = 116/177 (65.54%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RVAQSF+RF
Sbjct:   34 AAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIGSDQPVVRE-------EIETSAVVTRVAQSFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1422_BURPS (UPF0061 protein BPSL1422 OS=Burkholderia pseudomallei GN=BPSL1422 PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.664e-40
Identity = 91/177 (51.41%), Postives = 116/177 (65.54%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RVAQSF+RF
Sbjct:   34 AAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIGSDQPVVRE-------EIETSAVVTRVAQSFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1877_BURM1 (UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=Bmul_1366 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.839e-40
Identity = 89/170 (52.35%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG+G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLAAPYVVGFSDEVARLLGLPASLAAQPGFAELFAGNPTRDWPAEALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETAAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2140_BURTA (UPF0061 protein BTH_I2140 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I2140 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.708e-40
Identity = 91/177 (51.41%), Postives = 115/177 (64.97%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A +    P+A +  P +V +S+  A  L LDP   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE L     R+ELQLKGAG+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RVA+SF+RF
Sbjct:   34 AAFLTRQPAAPLPAPYVVGFSDDAARMLGLDPALRDAPGFAGLFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGE-LEHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALAVIGSDQPVVRE-------EIETSAVVTRVAESFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1826_BURA4 (UPF0061 protein BamMC406_1826 OS=Burkholderia ambifaria (strain MC40-6) GN=BamMC406_1826 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.708e-40
Identity = 88/170 (51.76%), Postives = 113/170 (66.47%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQ+KG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLPAPYVVGFSDEVAQLLGLPASFAAQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETSAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2155_BURXL (UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A2155 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.260e-40
Identity = 92/170 (54.12%), Postives = 112/170 (65.88%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S   A  L L+P     P F   FSG       A A+PYA  Y GHQFG+WAGQLGDGRA+ LGE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRALC++ + + V R+         E  A+V RVA SF+RF
Sbjct:   41 PAAPLSAPYVVGFSAETAALLGLEPGIENDPAFAELFSGNATREWPAEALPYASVYSGHQFGVWAGQLGDGRALGLGEVEH-GGRRFELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALCVIGSDQPVRRETV-------ETAAVVTRVAPSFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1896_BURCM (UPF0061 protein Bamb_1896 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_1896 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.260e-40
Identity = 88/170 (51.76%), Postives = 112/170 (65.88%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V  S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQ+KG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLPAPYVVGCSDEVAQLLGLPASFATQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETSAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1840_BURVG (UPF0061 protein Bcep1808_1840 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_1840 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.409e-39
Identity = 88/170 (51.76%), Postives = 111/170 (65.29%), Query Frame = 3
Query:   27 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            P+A +  P +V +S  VA  L L P       F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRAL ++ + + V R+       + E  A+V RV++SF+RF
Sbjct:   41 PAAPLPAPYVVGFSAEVAQLLGLPPSLAAHAQFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGSDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALTVIGSDQPVVRE-------EIETSAVVTRVSESFVRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y4038_DECAR (UPF0061 protein Daro_4038 OS=Dechloromonas aromatica (strain RCB) GN=Daro_4038 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38
Identity = 92/174 (52.87%), Postives = 111/174 (63.79%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT++ P    E P +V  S  VAD L L  +    P F   F+G   L G+ P A  Y GHQFG+WAGQLGDGRA  LG + N +   WE+QLKGAG+TPYSR ADG AVLRSSIREFLCSEAM  LG+PTTRALC++   + V R+       + E  A+V RVA  F+RF
Sbjct:   24 AFYTRLEPHPLPE-PYVVGVSTEVADLLGLPAELMNSPQFAEIFAGNRLLPGSEPLAAVYSGHQFGVWAGQLGDGRAHLLGGLRNDQGH-WEIQLKGAGRTPYSRGADGRAVLRSSIREFLCSEAMAGLGVPTTRALCVIGADQPVRRE-------EIETAALVARVAPGFVRF 188          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y2336_BURP01.664e-4051.41UPF0061 protein BURPS1106A_2336 OS=Burkholderia ps... [more]
Y1440_BURMA1.664e-4051.41UPF0061 protein BMA1440 OS=Burkholderia mallei GN=... [more]
Y1422_BURPS1.664e-4051.41UPF0061 protein BPSL1422 OS=Burkholderia pseudomal... [more]
Y1877_BURM12.839e-4052.35UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholde... [more]
Y2140_BURTA3.708e-4051.41UPF0061 protein BTH_I2140 OS=Burkholderia thailand... [more]
Y1826_BURA43.708e-4051.76UPF0061 protein BamMC406_1826 OS=Burkholderia ambi... [more]
Y2155_BURXL8.260e-4054.12UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovo... [more]
Y1896_BURCM8.260e-4051.76UPF0061 protein Bamb_1896 OS=Burkholderia ambifari... [more]
Y1840_BURVG1.409e-3951.76UPF0061 protein Bcep1808_1840 OS=Burkholderia viet... [more]
Y4038_DECAR1.193e-3852.87UPF0061 protein Daro_4038 OS=Dechloromonas aromati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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