CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1019_THIDA (UPF0061 protein Tbd_1019 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=Tbd_1019 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.920e-38
Identity = 90/172 (52.33%), Postives = 108/172 (62.79%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            Y +V P+  V +P LV +S      L+LD  E +RP+     +G   L G    A  Y GHQFG +  QLGDGRAI LGE+ N   E WE+QLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH L IPTTRAL +V +   V R+        EE  A+V R+A SF+RF
Sbjct:   21 YARVCPTP-VPDPYLVCYSPEALSLLDLDATELKRPETIETLAGNRLLPGMDAIAALYAGHQFGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGRTPYSRGGDGRAVLRSSIREFLCSEAMHALDIPTTRALAVVGSDHPVYRE-------DEETAALVTRLAPSFVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y486_PSEF5 (UPF0061 protein PFL_0486 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_0486 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.010e-37
Identity = 85/163 (52.15%), Postives = 105/163 (64.42%), Query Frame = 3
Query:   39 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            ++NP+LVA S      L+LDP   E P F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC++ +   V R+       K+E GA+V R+A S +RF
Sbjct:   29 LDNPRLVAASPGAMALLDLDPAVAETPVFAELFGGHKLWAEAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVYNQAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALCVIGSDTPVWRE-------KQERGAMVLRLAPSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2935_VARPS (UPF0061 protein Vapar_2935 OS=Variovorax paradoxus (strain S110) GN=Vapar_2935 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.010e-37
Identity = 93/175 (53.14%), Postives = 114/175 (65.14%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A  T++ P+   + P  V  SE+ A  L L P ++ + +  L   +G  P+AG +P+A  Y GHQFG+WAGQLGDGRAI LGE         E+QLKGAG+TPYSR ADG AVLRSSIREFLCSEAMH LGIPTTRALC+  +   V R+M        E  A+V RVA SF+RF
Sbjct:   27 AFLTELRPTPLPDPPYWVGHSEAAARLLGL-PADWRQSEGTLAALTGNLPVAGTLPFATVYSGHQFGVWAGQLGDGRAIMLGET----EGGLEVQLKGAGRTPYSRGADGRAVLRSSIREFLCSEAMHGLGIPTTRALCVTGSDARVYREM-------PETAAVVTRVAPSFIRF 189          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y3881_PSEU5 (UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (strain A1501) GN=PST_3881 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.938e-37
Identity = 87/171 (50.88%), Postives = 110/171 (64.33%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T+VSP   +E P+LV  SE+    L+LDP E E+  F   FSG    + A P A  Y GHQFG +  QLGDGR + LGE++N   E W+L LKGAGKTPYSR  DG AVLRSSIREFL SE +H LGIP++RALC+  +   V R+       + E GA++ R+A S +RF
Sbjct:   22 TQVSPQP-LEAPRLVVASEAAMALLDLDPAEAEQALFAELFSGHKIWSTAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGKTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTGSDTLVYRE-------RPERGAMLLRLAPSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2107_BORBR (UPF0061 protein BB2107 OS=Bordetella bronchiseptica GN=BB2107 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.837e-37
Identity = 89/172 (51.74%), Postives = 106/172 (61.63%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT++ P      P+L+  +   A  + LDP EF    F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+    +  WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTR+L LV +   V R+         E  A+V R+A SF+RF
Sbjct:   23 YTRLQPRPPAA-PRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PAGGWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVSDDPVMRETV-------ETAAVVTRMAPSFVRF 185          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1919_BORPA (UPF0061 protein BPP1919 OS=Bordetella parapertussis GN=BPP1919 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.837e-37
Identity = 89/172 (51.74%), Postives = 106/172 (61.63%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT++ P      P+L+  +   A  + LDP EF    F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+    +  WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTR+L LV +   V R+         E  A+V R+A SF+RF
Sbjct:   23 YTRLQPRPPAA-PRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PAGGWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVSDDPVMRETV-------ETAAVVTRMAPSFVRF 185          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y5028_PSESM (UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae pv. tomato GN=PSPTO_5028 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.011e-37
Identity = 84/163 (51.53%), Postives = 107/163 (65.64%), Query Frame = 3
Query:   39 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            ++ P+LV  SES    L+L P++ E P F   FSG    A A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RA C+V++   V R+       K+E  A+V R+AQS +RF
Sbjct:   29 IDAPRLVVASESALALLDLAPEQSELPLFAEIFSGHKLWAEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRAACVVSSNTPVWRE-------KQEYAAMVLRLAQSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y558_PSEMY (UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina (strain ymp) GN=Pmen_0558 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.545e-37
Identity = 84/171 (49.12%), Postives = 108/171 (63.16%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T+V P   +E P+LV  S      L+LDP E +R +F   F+G      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SE +H LGIP++RALC+ T+   V R+       K+E  A+V R+A S +RF
Sbjct:   22 TEVLPEP-IEQPRLVVASSDAMALLDLDPAEAQREEFAELFAGHKLWGEAEPRAMVYSGHQFGGYTPRLGDGRGLLLGEVVNAAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTTSDTPVWRE-------KQERAAMVLRLAPSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y4511_AZOVD (UPF0061 protein Avin_45110 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=Avin_45110 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.904e-36
Identity = 83/171 (48.54%), Postives = 106/171 (61.99%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T V+P   + +P+LV  S +    L+L+P   + P    + +G  P  GA P A  Y GHQFG +  QLGDGR + LGE++N   ERW+L LKGAGKTPYSR  DG AVLRSSIREFL SE +H LGIPT+RALC+  +   V R+        EE  A + R+A S +RF
Sbjct:   22 TAVTP-LPIASPRLVVASPAALALLDLEPAVADDPQLVEYCAGQCPWPGAEPRAMAYSGHQFGFYNPQLGDGRGLLLGEVINAAGERWDLHLKGAGKTPYSRMGDGRAVLRSSIREFLASEHLHALGIPTSRALCVTASDTPVWRE-------TEERAATLLRLAPSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y444_PSEFS (UPF0061 protein PFLU_0444 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_0444 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.904e-36
Identity = 83/163 (50.92%), Postives = 103/163 (63.19%), Query Frame = 3
Query:   39 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            ++ P+LV  S +    L+LDP   E P F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LKGAG TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC++ +   V R+       K+E GA+V R+A S +RF
Sbjct:   29 LDAPRLVVASPAAMALLDLDPSVAETPVFAELFGGHKLWAEAEPRAMVYSGHQFGGYTPQLGDGRGLLLGEVYNEAGEHWDLHLKGAGMTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALCVIGSDTPVWRE-------KQERGAMVLRMAHSHIRF 184          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y1019_THIDA5.920e-3852.33UPF0061 protein Tbd_1019 OS=Thiobacillus denitrifi... [more]
Y486_PSEF51.010e-3752.15UPF0061 protein PFL_0486 OS=Pseudomonas fluorescen... [more]
Y2935_VARPS1.010e-3753.14UPF0061 protein Vapar_2935 OS=Variovorax paradoxus... [more]
Y3881_PSEU52.938e-3750.88UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (... [more]
Y2107_BORBR3.837e-3751.74UPF0061 protein BB2107 OS=Bordetella bronchiseptic... [more]
Y1919_BORPA3.837e-3751.74UPF0061 protein BPP1919 OS=Bordetella parapertussi... [more]
Y5028_PSESM5.011e-3751.53UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae... [more]
Y558_PSEMY6.545e-3749.12UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina... [more]
Y4511_AZOVD1.904e-3648.54UPF0061 protein Avin_45110 OS=Azotobacter vineland... [more]
Y444_PSEFS1.904e-3650.92UPF0061 protein PFLU_0444 OS=Pseudomonas fluoresce... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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