CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y5118_PSEPG (UPF0061 protein PputGB1_5118 OS=Pseudomonas putida (strain GB-1) GN=PputGB1_5118 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.487e-36
Identity = 87/171 (50.88%), Postives = 106/171 (61.99%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T+V P    E P+LV  SES    L+LDP   E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIPT+RALC++ +   V R+         E  A++ R+AQS +RF
Sbjct:   22 TQVLPEPIAE-PRLVVASESAMALLDLDPAHAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIPTSRALCVIGSSTPVWRE-------TRESAAMLTRLAQSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1735_HERAR (UPF0061 protein HEAR1735 OS=Herminiimonas arsenicoxydans GN=HEAR1735 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.487e-36
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEI---LNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  +  P LV  S S A  + LD  + +   F   F+G     G+ P +  Y GHQFG+WAGQLGDGRAI LG++     + S R ELQLKGAG TPYSR  DG AVLRSSIREFLCSEAM  LGIPTTRALC+  + + V R+       + E  A+  R+AQSF+RF
Sbjct:   27 AHYTALMPTP-LPAPYLVCASASAAALIGLDFSDIDSAAFIETFTGNRIPDGSRPLSAVYSGHQFGVWAGQLGDGRAILLGDVPAPTMIPSGRLELQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMAALGIPTTRALCVTGSDQIVLRE-------QRETAAVATRMAQSFVRF 195          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y3040_BORPD (UPF0061 protein Bpet3040 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=Bpet3040 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.242e-36
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT+++P   +  P+L+  +E  A  + L        +F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+       WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTR+L LV +   V R+         E  AIV R++ SF+RF
Sbjct:   21 AFYTRLAPQP-LTAPRLLHANEQAAALIGLSADALRSDEFLRVFSGQQPLPGGQTLAAVYSGHQFGVWAGQLGDGRAHLLGEVAG-PDGNWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVSDDPVMRETV-------ETAAIVTRMSPSFVRF 185          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YE35_SCHPO (UPF0061 protein C20G4.05c OS=Schizosaccharomyces pombe GN=SPAC20G4.05c PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.236e-36
Identity = 84/173 (48.55%), Postives = 116/173 (67.05%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGAT-PLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKS-ERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            +T ++PS +  N QL+A+S S   SL L+  E +   F     G+   +    P+AQCYGG+QFG WAGQLGDGR ++L E+ N ++ +R+E+Q+KGAG+TPYSRFADG AVLRSSIRE+LC EA++ LGIPTT+AL +      V +          EP A+VCR+A S++R
Sbjct:   50 FTYLTPSLKA-NSQLLAYSPSSVKSLGLEESETQTEAFQQLVVGSNVDVNKCCPWAQCYGGYQFGDWAGQLGDGRVVSLCELTNPETGKRFEIQVKGAGRTPYSRFADGKAVLRSSIREYLCCEALYALGIPTTQALAISNLEGVVAQ------RETVEPCAVVCRMAPSWIR 215          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y5068_PSEPK (UPF0061 protein PP_5068 OS=Pseudomonas putida (strain KT2440) GN=PP_5068 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 9.451e-36
Identity = 85/171 (49.71%), Postives = 107/171 (62.57%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T+V P   + +P+LV  SES    L+LDP + E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGI T+RALC++ +   V R+         E  A++ R+AQS +RF
Sbjct:   22 TQVLPEP-IADPRLVVASESAMALLDLDPAQAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIATSRALCVIGSSTPVWRE-------TRESAAMLTRLAQSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y3959_PSEA6 (UPF0061 protein Patl_3959 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=Patl_3959 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.451e-36
Identity = 79/163 (48.47%), Postives = 105/163 (64.42%), Query Frame = 3
Query:   39 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            V NPQLV  + ++ D+L+L    F +        G T       +AQ YGGHQFG W   LGDGR + LGE  +   + W+L LKGAG TPYSRFADG AVLRS++RE+L SEA+H +GIPT+RALCL+T+ + V R+       K+E  A++ RV+QS +RF
Sbjct:   23 VANPQLVEVNHTLRDALQLPASWFTQSSIMSMLFGNTSSFTTHSFAQKYGGHQFGGWNPDLGDGRGVLLGEAKDKFGKSWDLHLKGAGPTPYSRFADGRAVLRSTLREYLASEALHHMGIPTSRALCLITSDEPVYRE-------KQEKAAMMIRVSQSHIRF 178          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALTY (UPF0061 protein ydiU OS=Salmonella typhimurium GN=ydiU PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQRE-------TQETGAMLMRLAQSHMRF 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALPK (UPF0061 protein ydiU OS=Salmonella paratyphi A (strain AKU_12601) GN=ydiU PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQRE-------TQETGAMLMRLAQSHMRF 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALPA (UPF0061 protein ydiU OS=Salmonella paratyphi A GN=ydiU PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQRE-------TQETGAMLMRLAQSHMRF 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y4941_PSEP1 (UPF0061 protein Pput_4941 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=Pput_4941 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 85/171 (49.71%), Postives = 107/171 (62.57%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T+V P   + +P+LV  SES    L+LDP + E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGI T+RALC++ +   V R+         E  A++ R+AQS +RF
Sbjct:   22 TQVLPEP-IADPRLVVASESAMALLDLDPAQAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDVGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIATSRALCVIGSSTPVWRE-------TRESAAMLTRLAQSHVRF 184          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y5118_PSEPG2.487e-3650.88UPF0061 protein PputGB1_5118 OS=Pseudomonas putida... [more]
Y1735_HERAR2.487e-3650.85UPF0061 protein HEAR1735 OS=Herminiimonas arsenico... [more]
Y3040_BORPD4.242e-3650.00UPF0061 protein Bpet3040 OS=Bordetella petrii (str... [more]
YE35_SCHPO7.236e-3648.55UPF0061 protein C20G4.05c OS=Schizosaccharomyces p... [more]
Y5068_PSEPK9.451e-3649.71UPF0061 protein PP_5068 OS=Pseudomonas putida (str... [more]
Y3959_PSEA69.451e-3648.47UPF0061 protein Patl_3959 OS=Pseudoalteromonas atl... [more]
YDIU_SALTY1.234e-3548.28UPF0061 protein ydiU OS=Salmonella typhimurium GN=... [more]
YDIU_SALPK1.234e-3548.28UPF0061 protein ydiU OS=Salmonella paratyphi A (st... [more]
YDIU_SALPA1.234e-3548.28UPF0061 protein ydiU OS=Salmonella paratyphi A GN=... [more]
Y4941_PSEP11.234e-3549.71UPF0061 protein Pput_4941 OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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