CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y398_PSEPW (UPF0061 protein PputW619_0398 OS=Pseudomonas putida (strain W619) GN=PputW619_0398 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.612e-35
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T+V P   + +P+LV  S+S    L+LDP + + P F   FSG     GA P A  Y GHQFG +  +LGDGR + L E++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGI T+RALC++ +   V R+         E  A++ R+AQS +RF
Sbjct:   22 TQVLPEP-IADPRLVIASKSAMALLDLDPAQADTPVFAELFSGHKLWEGADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVVNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIATSRALCVIGSSTPVWRE-------TRESAAMLTRLAQSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y369_PSEE4 (UPF0061 protein PSEEN0369 OS=Pseudomonas entomophila (strain L48) GN=PSEEN0369 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.612e-35
Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T+V P   + +P+LV  SE+    L+LDP + + P F   FSG      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC++ +   V R+         E  A++ R+A S +RF
Sbjct:   22 TQVLPDP-IADPRLVVASEAAMALLDLDPAQADLPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLGEVVNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALCVIGSSATVWRE-------TRETAAMLLRLAHSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALAR (UPF0061 protein ydiU OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ydiU PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.105e-35
Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQRE-------TQEAGAMLMRLAQSHMRF 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y485_PSE14 (UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_0485 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.105e-35
Identity = 82/166 (49.40%), Postives = 106/166 (63.86%), Query Frame = 3
Query:   30 SAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            S  +E P+LV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE  N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RA C+V++   V R+        +E  A+V R+AQS +RF
Sbjct:   26 SEPIETPRLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEAYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRAGCVVSSSTPVWRE-------TQEHAAMVLRLAQSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2277_BORA1 (UPF0061 protein BAV2277 OS=Bordetella avium (strain 197N) GN=BAV2277 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.750e-35
Identity = 87/172 (50.58%), Postives = 105/172 (61.05%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT+++ +  +  P+L+  +   A  + LDP E     F    SG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+       WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTRAL LV +   V R+         E  AIV R++ SF+RF
Sbjct:   23 YTRLA-AQPLGRPRLLHANAEAAALIGLDPAELHTQAFLEVASGQRPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PGGSWELQLKGAGLTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRALALVVSDDPVMRE-------TRETAAIVTRMSPSFVRF 185          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y494_PSEU2 (UPF0061 protein Psyr_0494 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_0494 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.591e-35
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 3
Query:   15 TKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            T V P   ++ PQLV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SE +H LGIP++RA C+V++   V R+        +E  A+V R+AQS +RF
Sbjct:   22 TSVLPEP-IDAPQLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGCVVSSSTPVWRE-------TQEHAAMVLRLAQSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALTI (UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.691e-35
Identity = 83/174 (47.70%), Postives = 109/174 (62.64%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +V +   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGIWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQRE-------TQETGAMLMRLAQSHMRF 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALPB (UPF0061 protein ydiU OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydiU PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.691e-35
Identity = 83/174 (47.70%), Postives = 109/174 (62.64%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +V +   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQRE-------TQETGAMLMRLAQSHMRF 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALNS (UPF0061 protein ydiU OS=Salmonella newport (strain SL254) GN=ydiU PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.691e-35
Identity = 83/174 (47.70%), Postives = 109/174 (62.64%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +V +   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQRE-------TQETGAMLMRLAQSHMRF 180          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALHS (UPF0061 protein ydiU OS=Salmonella heidelberg (strain SL476) GN=ydiU PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.691e-35
Identity = 83/174 (47.70%), Postives = 109/174 (62.64%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +V +   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQRE-------TQETGAMLMRLAQSHMRF 180          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y398_PSEPW1.612e-3548.54UPF0061 protein PputW619_0398 OS=Pseudomonas putid... [more]
Y369_PSEE41.612e-3547.95UPF0061 protein PSEEN0369 OS=Pseudomonas entomophi... [more]
YDIU_SALAR2.105e-3548.28UPF0061 protein ydiU OS=Salmonella arizonae (strai... [more]
Y485_PSE142.105e-3549.40UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae... [more]
Y2277_BORA12.750e-3550.58UPF0061 protein BAV2277 OS=Bordetella avium (strai... [more]
Y494_PSEU23.591e-3548.54UPF0061 protein Psyr_0494 OS=Pseudomonas syringae ... [more]
YDIU_SALTI4.691e-3547.70UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU P... [more]
YDIU_SALPB4.691e-3547.70UPF0061 protein ydiU OS=Salmonella paratyphi B (st... [more]
YDIU_SALNS4.691e-3547.70UPF0061 protein ydiU OS=Salmonella newport (strain... [more]
YDIU_SALHS4.691e-3547.70UPF0061 protein ydiU OS=Salmonella heidelberg (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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