CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECOSE (UPF0061 protein ydiU OS=Escherichia coli (strain SE11) GN=ydiU PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.365e-34
Identity = 86/172 (50.00%), Postives = 107/172 (62.21%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNAAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETV-------EPGAMLIRVAPSHLRF 178          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y5402_METPB (UPF0061 protein Mpop_5402 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=Mpop_5402 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.365e-34
Identity = 83/171 (48.54%), Postives = 106/171 (61.99%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 524
            + +V+P+A VE P+LV  + ++A  L LDP   E P+     SG     GA P A  Y GHQFG +  QLGDGRAI LGE++     R ++QLKG+G TP+SR  DG A L   +RE+L SEAMH LGIPTTRAL  VTTG+ V R+          PGA++ RVA S +R
Sbjct:   19 FARVAPTA-VEAPRLVRLNRTLALDLGLDPDRLESPEGLDVLSGRRVAEGAEPLAAAYAGHQFGQFVPQLGDGRAILLGEVVGRDGRRRDIQLKGSGPTPFSRRGDGRAALGPVLREYLVSEAMHALGIPTTRALAAVTTGEPVIRETVL-------PGAVLTRVASSHIR 181          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2581_POLSJ (UPF0061 protein Bpro_2581 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=Bpro_2581 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.365e-34
Identity = 85/172 (49.42%), Postives = 108/172 (62.79%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT++ P+  + +P  V  S+++A  L L+    E  +     +G    AG+ P A  Y GHQFG+WAGQLGDGRAI LG+ L   +   E+QLKGAG+TPYSR  DG AVLRSSIREFL SEAMH LGIPTTRALC+  +   V R+         E  A+V R + SF+RF
Sbjct:   33 YTELQPTP-LPSPYWVGRSQALARELGLEDHWLESAEALEVLTGNRSTAGSRPLASVYSGHQFGVWAGQLGDGRAILLGD-LQTPAGPQEIQLKGAGRTPYSRMGDGRAVLRSSIREFLASEAMHGLGIPTTRALCVTGSDAPVRREDI-------ETAAVVTRTSPSFIRF 195          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECO5E (UPF0061 protein ydiU OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.782e-34
Identity = 86/172 (50.00%), Postives = 107/172 (62.21%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETV-------EPGAMLMRVAPSHLRF 178          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECO57 (UPF0061 protein ydiU OS=Escherichia coli O157:H7 GN=ydiU PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.782e-34
Identity = 86/172 (50.00%), Postives = 107/172 (62.21%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETV-------EPGAMLMRVAPSHLRF 178          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2463_PECCP (UPF0061 protein PC1_2463 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=PC1_2463 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.782e-34
Identity = 88/172 (51.16%), Postives = 104/172 (60.47%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT + P   +   +L+  SE +A  L L    F  P+    +SG   L G  P AQ Y GHQFGMWAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS IREFL SEAMH LGIPTTRAL +VT+   V R+       +EE GA++ RVA+S +RF
Sbjct:   19 YTALQPKP-LHGARLLYHSEGLAAELGLSSDWFT-PEQDAVWSGERLLPGMEPLAQVYSGHQFGMWAGQLGDGRGILLGEQQLADGRSMDWHLKGAGLTPYSRMGDGRAVLRSVIREFLASEAMHHLGIPTTRALTIVTSTHPVQRE-------QEEKGAMLMRVAESHVRF 181          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y863_MYXXD (UPF0061 protein MXAN_0863 OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_0863 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.328e-34
Identity = 78/170 (45.88%), Postives = 108/170 (63.53%), Query Frame = 3
Query:   18 KVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            +V PS    + +LV+ + +    L+L P+E +RP+F     GA PL G  P+A  Y GHQFG++  +LGDGRA+ LGE+ +    +W+L LKG G TP+SR  DG AVLRS+IRE+LC EAMH LGIPTTR L ++ +   V R+         E GA++ R+A S +RF
Sbjct:   23 RVHPSP-FPDAKLVSVNPAALKLLDLTPEEAQRPEFVAAMGGAKPLPGMEPFAMVYAGHQFGVYVPRLGDGRALLLGEVRDAAGAKWDLHLKGGGPTPFSRGGDGRAVLRSTIREYLCGEAMHGLGIPTTRGLGILGSQAPVYREAV-------ETGAMLVRMAPSHVRF 184          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1842_ERWCT (UPF0061 protein ECA1842 OS=Erwinia carotovora subsp. atroseptica GN=ECA1842 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.040e-34
Identity = 87/172 (50.58%), Postives = 105/172 (61.05%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT + P+  +   +L+  SE +A  L L    F  P+    +SG   L G  P AQ Y GHQFG WAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS+IREFL SEAMH LGIPTTRAL +VT+   V R+       +EE GA++ RVA+S +RF
Sbjct:   19 YTALQPTP-LHGARLLYHSEGLASELGLSSDWFT-PEQDDVWSGTRLLPGMEPLAQVYSGHQFGSWAGQLGDGRGILLGEQQLADGRSMDWHLKGAGLTPYSRMGDGRAVLRSAIREFLASEAMHHLGIPTTRALTIVTSQHPVQRE-------QEEKGAMLLRVAESHVRF 181          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2105_ENTS8 (UPF0061 protein ESA_02105 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ESA_02105 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.971e-34
Identity = 83/172 (48.26%), Postives = 108/172 (62.79%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT+++P+  + N +L+  +  +A +LEL    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE       + +  LKGAG TPYSR  DG AVLRS++REFL SEAMH LGIPTTRAL +VT+   V R+         E GA++ R+A+S +RF
Sbjct:   19 YTELTPTP-LNNSRLLCHNAPLAQALELPETLFDYQGPAGVWGGETLLPGMAPLAQVYSGHQFGVWAGQLGDGRGILLGEQQLSDGCKLDWHLKGAGLTPYSRMGDGRAVLRSTVREFLASEAMHGLGIPTTRALTIVTSDTPVRRE-------TTERGAMLMRIAESHVRF 182          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SHIB3 (UPF0061 protein ydiU OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ydiU PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.186e-34
Identity = 86/172 (50.00%), Postives = 106/172 (61.63%), Query Frame = 3
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +LV  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLVWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
YDIU_ECOSE1.365e-3450.00UPF0061 protein ydiU OS=Escherichia coli (strain S... [more]
Y5402_METPB1.365e-3448.54UPF0061 protein Mpop_5402 OS=Methylobacterium popu... [more]
Y2581_POLSJ1.365e-3449.42UPF0061 protein Bpro_2581 OS=Polaromonas sp. (stra... [more]
YDIU_ECO5E1.782e-3450.00UPF0061 protein ydiU OS=Escherichia coli O157:H7 (... [more]
YDIU_ECO571.782e-3450.00UPF0061 protein ydiU OS=Escherichia coli O157:H7 G... [more]
Y2463_PECCP1.782e-3451.16UPF0061 protein PC1_2463 OS=Pectobacterium carotov... [more]
Y863_MYXXD2.328e-3445.88UPF0061 protein MXAN_0863 OS=Myxococcus xanthus (s... [more]
Y1842_ERWCT3.040e-3450.58UPF0061 protein ECA1842 OS=Erwinia carotovora subs... [more]
Y2105_ENTS83.971e-3448.26UPF0061 protein ESA_02105 OS=Enterobacter sakazaki... [more]
YDIU_SHIB35.186e-3450.00UPF0061 protein ydiU OS=Shigella boydii serotype 1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
back to top