CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLU (UPF0061 protein ydiU OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.186e-34
Identity = 86/172 (50.00%), Postives = 108/172 (62.79%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L + P    + D  ++  G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSI-PSSLFKNDAGVW-GGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQRLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETV-------EPGAMLMRVAPSHLRF 178
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2131_KLEP7 (UPF0061 protein KPN78578_21310 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=KPN78578_21310 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.186e-34
Identity = 84/172 (48.84%), Postives = 105/172 (61.05%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  ++N +L+  +  +A  L +    F        + G   L G  P AQ Y GHQFG WAGQLGDGR I LGE       R++  LKGAG TPYSR  DG AVLRS+IRE L SEAMH LGIPTTRAL +VT+   V R+       + EPGA++ RVA+S +RF
Sbjct:   17 YTSLSPTP-LDNARLIWRNAPLAQQLGVPDALFAPESGAGVWGGEALLPGMSPLAQVYSGHQFGAWAGQLGDGRGILLGEQQLADGRRYDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHALGIPTTRALAMVTSDTPVYRE-------RVEPGAMLMRVAESHVRF 180
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SHISS (UPF0061 protein ydiU OS=Shigella sonnei (strain Ss046) GN=ydiU PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.773e-34
Identity = 85/172 (49.42%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLI (UPF0061 protein ydiU OS=Escherichia coli (strain K12) GN=ydiU PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.773e-34
Identity = 85/172 (49.42%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLC (UPF0061 protein ydiU OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ydiU PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.773e-34
Identity = 85/172 (49.42%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECOHS (UPF0061 protein ydiU OS=Escherichia coli O9:H4 (strain HS) GN=ydiU PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.773e-34
Identity = 85/172 (49.42%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECODH (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / DH10B) GN=ydiU PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.773e-34
Identity = 85/172 (49.42%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_ECOBW (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / BW2952) GN=ydiU PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.773e-34
Identity = 85/172 (49.42%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SALCH (UPF0061 protein ydiU OS=Salmonella choleraesuis GN=ydiU PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.846e-34
Identity = 82/174 (47.13%), Postives = 108/174 (62.07%), Query Frame = 3 
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ   GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +V +   V R+        +E GA++ R+AQS +RF
Sbjct:   15 ATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVCSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQRE-------TQETGAMLMRLAQSHMRF 180
[Close]
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: YDIU_SHIBS (UPF0061 protein ydiU OS=Shigella boydii serotype 4 (strain Sb227) GN=ydiU PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.155e-33
Identity = 85/172 (49.42%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:   12 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +VT+   V R+         EPGA++ RVA S LRF
Sbjct:   17 YTALSPTP-LNNARLIWHNIELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE-------TAEPGAMLMRVAPSHLRF 178
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
YDIU_ECOLU5.186e-3450.00UPF0061 protein ydiU OS=Escherichia coli O17:K52:H... [more]
Y2131_KLEP75.186e-3448.84UPF0061 protein KPN78578_21310 OS=Klebsiella pneum... [more]
YDIU_SHISS6.773e-3449.42UPF0061 protein ydiU OS=Shigella sonnei (strain Ss... [more]
YDIU_ECOLI6.773e-3449.42UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOLC6.773e-3449.42UPF0061 protein ydiU OS=Escherichia coli (strain A... [more]
YDIU_ECOHS6.773e-3449.42UPF0061 protein ydiU OS=Escherichia coli O9:H4 (st... [more]
YDIU_ECODH6.773e-3449.42UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOBW6.773e-3449.42UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_SALCH8.846e-3447.13UPF0061 protein ydiU OS=Salmonella choleraesuis GN... [more]
YDIU_SHIBS1.155e-3349.42UPF0061 protein ydiU OS=Shigella boydii serotype 4... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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