CF509988

Overview
NameCF509988
Unique NameCF509988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.228e-21
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 3
Query:   60 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 368
            +++ +GINGFGRIGRLV RV +++  + +VAVNDPFI  +YM YMFKYDS HG++K N      +  L+     +  +  ++P+EIPW+  G  YVVE TGV+
Sbjct:  106 RELTVGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGNVEHKNGQ--LVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVY 205          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            I++GINGFGRIGR+  R +L  D V++VA+NDPF   +YM YM KYD+VHG++       +D  T+      ++VF    PEEIPW KT  + V+E TG FT
Sbjct:    3 IRLGINGFGRIGRMALRASLNIDGVQVVAINDPFTDCEYMEYMLKYDTVHGRFDGTIAHSEDSITV--NGNKISVFKSMKPEEIPWGKTQVDIVLECTGRFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ + ++++ KD+  ++ G   +     RNP E+PW K GA+YVVESTG+FT
Sbjct:    3 KLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGKLR-SQVEAKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ + ++++ KD+  ++ G   +     RNP E+PW K GA+YVVESTG+FT
Sbjct:    3 KLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLR-SQVETKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 55/132 (41.67%), Postives = 74/132 (56.06%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQ------------------------------RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+G+NGFGRIGRLV R A                                +  V++VA+NDPFI  +YM YMFKYDS HG++K   +K ++ K ++ G   + +F  R+P +I W   GAEYVVESTGVFT
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFK-GTVKAENGKLVINGH-AITIFQERDPSKIKWGDAGAEYVVESTGVFT 131          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +KIGINGFGRIGRLVAR+A+    V LV +ND  +    + Y+FKYDS HG   +    V  E+ ++  ++ +  F  RNP ++PW   GA+YVVESTG+FT
Sbjct:    2 LKIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHG--SYGGTVVAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVESTGLFT 100          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   93 RIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            RIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++K   +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT
Sbjct:    1 RIGRLVTRAAFTSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFK-GTVKAENGKLVING-KAITIFQERDPTNIKWGDAGAEYVVESTGVFT 91          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 368
            IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W + G + V E+TG+F
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIF 100          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 3
Query:   96 IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            IGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT
Sbjct:    1 IGRLVTRAAFNTGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFT 90          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 368
            IKIGINGFGRIGR+V R A+    D+E+VA+ND  +  DY+ YM KYDSVHG++   E+ V D  TL+   K + +   ++P E+ W + GA+ VVESTG+F
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKDIEVVAIND-LLEPDYLAYMLKYDSVHGRF-DGEVSV-DGNTLVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIF 101          
The following BLAST results are available for this feature:
BLAST of CF509988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
G3PT_MOUSE1.228e-2147.57Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_GIALA2.736e-2148.04Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P1_ANAVT2.736e-2146.60Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP2.736e-2146.60Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_JACOR3.573e-2141.67Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P1_SYNY34.667e-2148.04Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_MESAU1.773e-2052.69Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_ESCF33.025e-2047.52Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_SHEEP3.951e-2052.17Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_RALSO3.951e-2050.00Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-502 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509988 ID=CF509988; Name=CF509988; organism=Citrus sinensis; type=EST; length=416bp
GCAGCGTTAAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATG
GCCGGAGACAAGAAGATCAAGATCGGAATCAACGGTTTCGGAAGGATCGG
CCGTTTGGTTGCGAGAGTCGCACTCCAGAGGGATGATGTGGAGCTGGTGG
CTGTCAACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAG
TACGATAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGA
CGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCA
GGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTG
GAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAA
GGGTGGTGCCAAGAAG
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