CF509988

Overview
NameCF509988
Unique NameCF509988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.689e-26
Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 368
            + +GINGFGRIGRLV R ALQ   + +VAVNDPF+  +YM Y+FKYDSVHG+++  +++ KD K ++ G K +A F  R P  I WA  GAEY+VESTGVF
Sbjct:    2 VNVGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQ-GKVETKDGKLIIDGHK-IAAFAEREPANIKWADCGAEYIVESTGVF 100          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.818e-26
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  D    + G K V  +  R+P  IPWA+TGA+YV+ESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSDNGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.818e-26
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 368
            +K+ INGFGRIGRLV R+ALQR  +E+VAVNDPFIS DY  YMFKYDS HG++K  E+       ++ G K +AVF  ++P  +PW K G + V++STGVF
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYK-GEVTTSGNDLVIDGHK-IAVFQEKDPANLPWGKLGVDIVIDSTGVF 100          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.293e-26
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV+     + G K +  +  ++P  IPW++TGA YVVESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFK-GDIKVEGNDLTING-KTIRFYTEKDPANIPWSETGAYYVVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 6.293e-26
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   69 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K+GINGFGRIGR+V R A++ + V++VAVNDPFI   Y  YM KYDS HG++  N     D  TL+   K +  +  R+P +IPW++TGAEYVVESTGVFT
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRF--NGTVEFDGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFT 103          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.293e-26
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV D   L    K V     ++P  IPW++TGA YVVESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.218e-26
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGRLV R A     VE+VA+NDPFI  DYM YMF+YDS HG++K  E+K +  K ++ G   + V+  R+P  I W   GA YVVESTGVFT
Sbjct:    2 VKVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYK-GEVKAEGGKLVIDGH-AITVYSERDPANIKWGDAGATYVVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.218e-26
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+G+NGFGRIGRLV R A     VE+VA+NDPFI  +YM YMF+YDS HG++K   +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFTSGKVEVVAINDPFIDLNYMVYMFQYDSTHGKFK-GTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.218e-26
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+G+NGFGRIGRLV R A+    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   + +F  R+P  I WA  GAEYVVESTGVFT
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVINGH-AITIFQERDPSNIKWADAGAEYVVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.073e-25
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+G+NGFGRIGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFT 101          
The following BLAST results are available for this feature:
BLAST of CF509988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
G3P1_AGABI3.689e-2656.44Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_COCIM4.818e-2656.86Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_KLULA4.818e-2655.45Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_PHANO6.293e-2655.88Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_MONAN6.293e-2655.45Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_CURLU6.293e-2657.84Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_DANRE8.218e-2655.88Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_CRIGR8.218e-2654.90Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CHICK8.218e-2654.90Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_RABIT1.073e-2553.92Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-502 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509988 ID=CF509988; Name=CF509988; organism=Citrus sinensis; type=EST; length=416bp
GCAGCGTTAAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATG
GCCGGAGACAAGAAGATCAAGATCGGAATCAACGGTTTCGGAAGGATCGG
CCGTTTGGTTGCGAGAGTCGCACTCCAGAGGGATGATGTGGAGCTGGTGG
CTGTCAACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAG
TACGATAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGA
CGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCA
GGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTG
GAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAA
GGGTGGTGCCAAGAAG
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