CF509988

Overview
NameCF509988
Unique NameCF509988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.391e-25
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++ DD+++VAVNDPFI   Y  YM +YDS HG +K   + V+    ++ G+K V  +  R+P  IPW++TGA+Y+VESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHDDIQIVAVNDPFIEPKYAEYMLRYDSTHGNFK-GTIAVEGSDLVVNGKK-VKFYTERDPSAIPWSETGADYIVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.391e-25
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+G+NGFGRIGRLV R A+    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   + +F  R+P  I W   GAEYVVESTGVFT
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVING-NAITIFQERDPSNIKWGDAGAEYVVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.391e-25
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   69 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K+GINGFGRIGR+V R AL+   VE+VA+NDPFI   Y  YMFKYDS HG++K  ++KV D K L+   K +  +  R+P  IPW  +GAEY+VESTGVFT
Sbjct:    4 KVGINGFGRIGRVVLRNALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFK-GDIKV-DGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.123e-25
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K GINGFGRIGR+V R +L   +VE+VA+NDPFI  +YM YMFKYDS HG++K   ++ KD K ++ G KP++V+  R+P  IP  + GAEY+VESTGVFT
Sbjct:    3 VKAGINGFGRIGRIVLRASLLNPEVEVVAINDPFIDLEYMVYMFKYDSTHGRFK-GTVEAKDGKLVVNG-KPISVYAERDPCCIP-GRIGAEYIVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.123e-25
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K  +GINGFGRIGRLV R A+++D V +VAVNDPFIS DYM Y+F+YDS HG++K          L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT
Sbjct:    3 KPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFT 108          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.123e-25
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K  +GINGFGRIGRLV R A+++D V +VAVNDPFIS DYM Y+F+YDS HG++K          L  K+ K+    +  + V+  R+P EI W   GA+YVVESTGVFT
Sbjct:    3 KPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGSAGADYVVESTGVFT 108          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.123e-25
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K  +GINGFGRIGRLV R A+++D V +VAVNDPFIS DYM Y+F+YDS HG++K          L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT
Sbjct:    3 KPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFT 108          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.123e-25
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +++GINGFGRIGR+V R      DV++VA+NDPFI  DYM YM KYD+VHG++    ++ KD K ++ G   +AV   R+P  IPW   GA+YVVESTGVFT
Sbjct:    3 VQVGINGFGRIGRIVLRATESNKDVQVVAINDPFIPLDYMVYMLKYDTVHGRF-DGSVEAKDGKLVVNGH-AIAVSAERDPTSIPWGSAGADYVVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 4.079e-25
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+G+NGFGRIGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K + +F  R+P  I W   GA YVVESTGVFT
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.079e-25
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A +  DVE+VAVNDPFI   Y  YM KYDS HG +K +     +   L+ G K V  +  R+P  IPW++TGA+Y+VESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGD--VTVEGSDLVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFT 102          
The following BLAST results are available for this feature:
BLAST of CF509988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
G3P_SORMA2.391e-2552.94Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_COTJA2.391e-2553.92Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P1_TRIKO2.391e-2557.43Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_RHIMI3.123e-2556.86Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P3_CAEEL3.123e-2552.73Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P3_CAEBR3.123e-2552.73Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL3.123e-2552.73Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P1_RHIRA3.123e-2553.92Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_PIG4.079e-2552.94Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_CRYPA4.079e-2554.90Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-502 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509988 ID=CF509988; Name=CF509988; organism=Citrus sinensis; type=EST; length=416bp
GCAGCGTTAAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATG
GCCGGAGACAAGAAGATCAAGATCGGAATCAACGGTTTCGGAAGGATCGG
CCGTTTGGTTGCGAGAGTCGCACTCCAGAGGGATGATGTGGAGCTGGTGG
CTGTCAACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAG
TACGATAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGA
CGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCA
GGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTG
GAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAA
GGGTGGTGCCAAGAAG
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