CF510000

Overview
NameCF510000
Unique NameCF510000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 48.1358 bits (113), Expect = 2.605e-11
Identity = 40/143 (27.97%), Postives = 58/143 (40.56%), Query Frame = 3
Query:  153 GIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNF-LVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            G+K +   GDV  +E   + VE T +  G LDILVN A       S +D++          +    F +  +A+ YLK              +     + YTA+   I+           TR +A     D  IRVN +APGP
Sbjct:   91 GVKCLLIAGDVGEEEFCNEAVEKTVKELGGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTSINPYVGNPTLIDYTATKGAIN---------AFTRTMAQALVKD-GIRVNAVAPGP 223          

HSP 2 Score: 40.0466 bits (92), Expect = 2.605e-11
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHGA 85
            LKGKVALITGG SGIG  +S  + K GA
Sbjct:   40 LKGKVALITGGDSGIGRAVSVAYAKEGA 67          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: YXEK_CAEEL (Uncharacterized oxidoreductase F53C11.3 OS=Caenorhabditis elegans GN=F53C11.3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 3
Query:   45 LGLRYQPNSVNMEPSVAIMGRRKQVLDAAVSALRS-LGIKAVGFEGDVRRQEHAKKVVESTFEHFGKL-DILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            LG        ++  SVAI  RR  VL+     +RS  G     F+ DV+      K  ++  +  G   DIL+N AAGNF+++ E LSPN + T++DI   GT  +  E                   +L+I+     + + + +           +T++LA EW A + +R N IAPGP
Sbjct:   38 LGKAIATTFAHLGASVAIAARRLDVLEKTADEIRSSTGGVCEPFQMDVKDPAKVAKAFDAVEKKLGHTPDILINNAAGNFIMATERLSPNAYGTIIDIVLKGTLHVTTEL------GRRCIQQKRGASVLSITTLYAQSGAPFVVPSAVSKAGVENMTKSLASEW-AKHGLRFNAIAPGP 210          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 3.380e-11
Identity = 40/134 (29.85%), Postives = 62/134 (46.27%), Query Frame = 3
Query:  180 DVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSA-EDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            D+   E+ K+VV+     FG++D+L+N AA  +  S  E++       V   +    F +   ALK++K+                ++ L YTA+   I            TR LAL+  A+  IRVNG+APGP
Sbjct:  101 DLGFDENCKRVVDEVVNAFGRIDVLINNAAEQYESSTIEEIDEPRLERVFRTNIFSYFFLTRHALKHMKEGSSIINTTSVNAYKGNASLLDYTATKGAI---------VAFTRGLALQL-AEKGIRVNGVAPGP 224          

HSP 2 Score: 35.039 bits (79), Expect = 3.380e-11
Identity = 17/28 (60.71%), Postives = 19/28 (67.86%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHGA 85
            L+GKVALITGG SGIG  +   F   GA
Sbjct:   35 LRGKVALITGGDSGIGRAVGYCFASEGA 62          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 4.398e-11
Identity = 39/133 (29.32%), Postives = 67/133 (50.38%), Query Frame = 3
Query:  180 DVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVS-AEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPG 575
            DV R+E  + +V  T   FG+LD +VN A  +      E+ S  GFR +++++ +GT+T+   AL +L+K            ++NIS+ +        +           +T+ LAL+  + Y +RVN I+PG
Sbjct:   62 DVTREEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKLALPHLRK--------SRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALD-ESQYGVRVNCISPG 185          

HSP 2 Score: 30.4166 bits (67), Expect = 4.398e-11
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2
Query:    8 GKVALITGGGSGIGFEISTQFGKHGA 85
            GKV ++TGGG GIG  I   F + GA
Sbjct:    9 GKVVIVTGGGRGIGAGIVRAFVESGA 34          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 5.694e-11
Identity = 40/139 (28.78%), Postives = 59/139 (42.45%), Query Frame = 3
Query:  165 VGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVS-AEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGP 578
            +    D+   ++ KKVV+     FG +D+LVN AA  +  S  ED+       V   +    F M   ALK++++                +  L YTA+   I            TR L+L+      IRVNG+APGP
Sbjct:  100 IAIAADLGFDDNCKKVVDQVVNAFGSIDVLVNNAAEQYKASTVEDIDEERLERVFRTNIFAYFFMARHALKHMREGSTIINTTSINAYKGNAKLLDYTATKGAI---------VAFTRGLSLQL-ISKGIRVNGVAPGP 228          

HSP 2 Score: 34.6538 bits (78), Expect = 5.694e-11
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHGA 85
            L+GKVAL+TGG SGIG  +   F   GA
Sbjct:   39 LQGKVALVTGGDSGIGRSVCYHFALEGA 66          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.412e-11
Identity = 39/133 (29.32%), Postives = 67/133 (50.38%), Query Frame = 3
Query:  180 DVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSA-EDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPG 575
            DV +++  K +V  T   FG+LD +VN A  +      E+ S  GFR +++++ +GT+T+   AL YL+K            ++NIS+ +        +           +T+ LAL+  + Y +RVN I+PG
Sbjct:   62 DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRK--------SQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALD-ESPYGVRVNCISPG 185          

HSP 2 Score: 29.6462 bits (65), Expect = 7.412e-11
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 2
Query:    8 GKVALITGGGSGIGFEISTQFGKHGA 85
            GKV ++TGGG GIG  I   F   GA
Sbjct:    9 GKVVVVTGGGRGIGAGIVRAFVNSGA 34          
BLAST of CF510000 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 9.656e-11
Identity = 26/86 (30.23%), Postives = 48/86 (55.81%), Query Frame = 3
Query:  123 DAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYL 380
            DA V A+ + G KA+  + DV +   A+ +VE+  + FG+LD+LVN +      + E+++   +R + D++ +G       A K+L
Sbjct:   45 DAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRLDVLVNNSGVYEFAAIEEVTEEHYRRIFDVNVLGVLLATQAASKHL 130          

HSP 2 Score: 31.9574 bits (71), Expect = 9.656e-11
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 2
Query:    2 LKGKVALITGGGSGIGFEISTQFGKHG-AFSCNHGTSQA 115
            L+GKVA++TG   GIG  I+    K G A   N+ +S+A
Sbjct:    4 LEGKVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKA 42          
The following BLAST results are available for this feature:
BLAST of CF510000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GS39_BACSU2.605e-1127.97General stress protein 39 OS=Bacillus subtilis GN=... [more]
YXEK_CAEEL3.370e-1129.44Uncharacterized oxidoreductase F53C11.3 OS=Caenorh... [more]
GRDH1_ARATH3.380e-1129.85Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
DHB14_BOVIN4.398e-1129.3217-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
GRDH_DAUCA5.694e-1128.78Glucose and ribitol dehydrogenase OS=Daucus carota... [more]
DHB14_HUMAN7.412e-1129.3217-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
Y182_METEA9.656e-1130.23Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-515 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510000 ID=CF510000; Name=CF510000; organism=Citrus sinensis; type=EST; length=578bp
ATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGTTCGGGAATTGGGT
TTGAGATATCAACCCAATTCGGTAAACATGGAGCCTTCAGTTGCAATCAT
GGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTGCTCTTCGGTCTC
TTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGTAGGCAGGAACAT
GCGAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGGGAAGCTTGACAT
TCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAGCTGAGGATTTGT
CCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCTGTCGGCACATTC
ACAATGTGCCATGAAGCACTTAAATATCTTAAAAAAGGTGGACCTGGGAG
AAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTGCTACTTTACATT
ATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCCAAGGCAGCTGTT
GATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGCTGACTATGATAT
TCGAGTCAATGGAATTGCCCCAGGCCCC
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