CF510001

Overview
NameCF510001
Unique NameCF510001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.404e-27
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHASD---IIHRDVKTNNILLDSNFCVKVADFGLSRLFP-LDVTHVSTAPQGTPGY 425
            AVKR    + + + +F  E+E+L++ RH++LVSL G     ++ ++L+YE++ NGTV   L+G       LTW  R+ I I  A  L YLH  D   +IHRDVK+ NILLD NF  KVADFGLS+  P LD THVSTA +G+ GY
Sbjct:  511 AVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNE-MILIYEYMENGTVKSHLYGSGLPS--LTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVSTAVKGSFGY 652          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.446e-27
Identity = 65/146 (44.52%), Postives = 94/146 (64.38%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFG-CTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHASD---IIHRDVKTNNILLDSNFCVKVADFGLSRLF-PLDVTHVSTAPQGTPGY 425
            AVK  +D      + F+NEV +L+++RH+NLVS  G C     Q  +LVYE+++ G++AD L+G R+K   L W  R+ +A++ A  L YLH      IIHRDVK++NILLD +   KV+DFGLS+ F   D +H++T  +GT GY
Sbjct:  632 AVKVRFDRTQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQ--ILVYEYLSGGSLADHLYGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLSKQFTKADASHITTVVKGTAGY 775          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.446e-27
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGY 425
            AVKR    +  +VE+F+NEV +L+++ H+N+V L GC    ++  +LVYE + NG +  +LH D   +  +TW +R+ I++E A ALAYLH++    + HRDVKT NILLD  +  KV+DFG SR   +D TH++T   GT GY
Sbjct:  447 AVKRSKVLDEDKVEEFINEVGVLSQINHRNIVKLMGCCLE-TEVPILVYEHIPNGDLFKRLHHDSDDY-TMTWDVRLRISVEIAGALAYLHSAASTPVYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTHLTTLVAGTFGY 588          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.446e-27
Identity = 66/145 (45.52%), Postives = 91/145 (62.76%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLD-VTHVSTAPQGTPGY 425
            AVK L  ++ +  ++F  EVE+L R+ HKNLV L G      + L L+YE++ANG + + + G R    +L W  R+ I +E+A  L YLH      ++HRDVKT NILL+ +   K+ADFGLSR FP++  THVST   GTPGY
Sbjct:  618 AVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDE-GENLALIYEYMANGDLREHMSGKRGG-SILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGY 760          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.446e-27
Identity = 64/145 (44.14%), Postives = 95/145 (65.52%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLH---ASDIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLD-VTHVSTAPQGTPGY 425
            AVK     + +   +F NE+ +L+ ++H+NLV L G  + Y Q +L VY F++NG++ D+L+G+ AK  +L WP R++IA+  A  LAYLH      +IHRDVK++NILLD + C KVADFG S+  P +  ++VS   +GT GY
Sbjct:  621 AVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQIL-VYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGY 764          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.807e-27
Identity = 65/148 (43.92%), Postives = 95/148 (64.19%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHG----LLTWPIRMNIAIETASALAYLH---ASDIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGY 425
            A+KR   ++ + + +F  E+++L++LRH++LVSL G      + ++LVYE+++NG + D L+G +         L+W  R+ I I +A  L YLH   A  IIHRDVKT NILLD N   KV+DFGLS+  P+D  HVSTA +G+ GY
Sbjct:  551 AIKRGSQSSEQGINEFQTEIQMLSKLRHRHLVSLIGFCDENKE-MILVYEYMSNGPLRDHLYGSKENDPNPIPTLSWKQRLEICIGSARGLHYLHTGAAQGIIHRDVKTTNILLDENLVAKVSDFGLSKDAPMDEGHVSTAVKGSFGY 697          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.905e-27
Identity = 70/150 (46.67%), Postives = 91/150 (60.67%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGL-LTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVT-----HVSTAPQGTPGY 425
            A+KR   NN +  +Q +NEV IL ++ H++LV L GC       LL +YEF+ NGT+ + LHG   +    LTW  R+ IA +TA  LAYLH++    I HRDVK++NILLD     KV+DFGLSRL  L  T     H+ T  QGT GY
Sbjct:  389 AIKRAKLNNTKGTDQILNEVRILCQVNHRSLVRLLGCCVDLELPLL-IYEFIPNGTLFEHLHGSSDRTWKPLTWRRRLQIAYQTAEGLAYLHSAAQPPIYHRDVKSSNILLDEKLNAKVSDFGLSRLVDLTETANNESHIFTGAQGTLGY 537          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.905e-27
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLH---ASDIIHRDVKTNNILLDSNFCVKVADFGLSRLFP-LDVTHVSTAPQGTPGY 425
            AVKR    + + + +F  E+E+L++LRH++LVSL G     S+ ++LVYE++ANG +   L+G  A    L+W  R+ I I  A  L YLH   +  IIHRDVKT NILLD N   KVADFGLS+  P LD THVSTA +G+ GY
Sbjct:  536 AVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSE-MILVYEYMANGPLRSHLYG--ADLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHVSTAVKGSFGY 677          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: WAKLE_ARATH (Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.294e-26
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGY 425
            AVKR    +  ++E+F+NE+ +L+++ H+N+V L GC    ++  +LVYE++ NG +  +LH D +    +TW +R+ IAIE A AL Y+H++    I HRD+KT NILLD  +  KV+DFG SR   +D TH++T   GT GY
Sbjct:  458 AVKRSKVVDEDKLEKFINEIILLSQINHRNIVKLIGCCLE-TEVPILVYEYIPNGDMFKRLH-DESDDYAMTWEVRLRIAIEIAGALTYMHSAASFPIYHRDIKTTNILLDEKYGAKVSDFGTSRSVTIDQTHLTTMVAGTFGY 599          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.690e-26
Identity = 68/145 (46.90%), Postives = 91/145 (62.76%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLD-VTHVSTAPQGTPGY 425
            AVK L  ++ +  +QF  EVE+L R+ HKNLV L G        L L+YE++ANG + + + G R +  +L W  R+ I IE+A  L YLH      ++HRDVKT NILL+ +F  K+ADFGLSR F ++  THVST   GTPGY
Sbjct:  604 AVKILSHSSSQGYKQFKAEVELLLRVHHKNLVGLVGYCDE-GDNLALIYEYMANGDLKEHMSGTRNRF-ILNWGTRLKIVIESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHFEAKLADFGLSRSFLIEGETHVSTVVAGTPGY 746          
The following BLAST results are available for this feature:
BLAST of CF510001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
HERK_ARATH3.404e-2747.59Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y5487_ARATH4.446e-2744.52Probable LRR receptor-like serine/threonine-protei... [more]
WAKLI_ARATH4.446e-2744.44Wall-associated receptor kinase-like 22 OS=Arabido... [more]
RLK6_ARATH4.446e-2745.52Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
NORK_PEA4.446e-2744.14Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
Y5613_ARATH5.807e-2743.92Probable receptor-like protein kinase At5g61350 OS... [more]
WAKLQ_ARATH9.905e-2746.67Wall-associated receptor kinase-like 20 OS=Arabido... [more]
THE1_ARATH9.905e-2748.97Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
WAKLE_ARATH1.294e-2643.06Wall-associated receptor kinase-like 5 OS=Arabidop... [more]
Y5182_ARATH1.690e-2646.90Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-516 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510001 ID=CF510001; Name=CF510001; organism=Citrus sinensis; type=EST; length=426bp
TTGCAGTCAAGCGCCTATATGACAACAACTACAGAAGGGTTGAACAATTT
ATGAATGAAGTTGAAATCCTCACACGTTTGCGCCACAAAAATCTTGTCTC
CCTTTTTGGCTGCACCTCTCGTTACAGTCAGGGTCTCCTACTTGTGTATG
AATTTGTTGCCAATGGCACTGTTGCGGATCAACTCCATGGTGATCGAGCT
AAGCATGGTTTGCTGACATGGCCTATCCGTATGAACATTGCCATAGAAAC
TGCCAGTGCATTGGCATATCTTCATGCTTCTGATATCATTCATCGTGATG
TGAAGACTAACAACATTCTCCTTGACAGCAATTTTTGTGTCAAAGTTGCA
GATTTTGGGCTTTCGCGATTGTTCCCTTTAGATGTTACTCACGTCTCAAC
TGCACCACAAGGAACTCCAGGCTATG
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