CF510001

Overview
NameCF510001
Unique NameCF510001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.385e-26
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQL-HGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDV--THVSTAPQGTPGY 425
            AVKRL   + +  ++F  E+E+L++LRH +LVSL G     ++ ++LVYE++ +GT+ D L   D+A    L+W  R+ I I  A  L YLH      IIHRD+KT NILLD NF  KV+DFGLSR+ P     THVST  +GT GY
Sbjct:  552 AVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNE-MVLVYEYMPHGTLKDHLFRRDKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSASQTHVSTVVKGTFGY 697          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.385e-26
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHG--LLTWPIRMNIAIETASALAYLHASD---IIHRDVKTNNILLDSNFCVKVADFGLSRLFPL-DVTHVSTAPQGTPGY 425
            AVK L  ++ +  ++F  EVE+L R+ H NLVSL G     +  L L+YE++ANG +   L G   KHG  +L W  R++IA+ETA  L YLH+     ++HRDVK+ NILLD +F  K+ADFGLSR F + + +HVST   GTPGY
Sbjct:  599 AVKVLSPSSSQGYKEFKAEVELLLRVHHINLVSLVGYCDEQAH-LALIYEYMANGDLKSHLSG---KHGDCVLKWENRLSIAVETALGLEYLHSGCKPLMVHRDVKSMNILLDEHFQAKLADFGLSRSFSVGEESHVSTGVVGTPGY 741          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.385e-26
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHASD---IIHRDVKTNNILLDSNFCVKVADFGLSRLFP-LDVTHVSTAPQGTPGY 425
            AVKR    + + + +F  EVE+LT+ RH++LVSL G     S+ +++VYE++  GT+ D L+ D      L+W  R+ I +  A  L YLH      IIHRDVK+ NILLD NF  KVADFGLS+  P LD THVSTA +G+ GY
Sbjct:  513 AVKRGAPQSRQGLAEFKTEVEMLTQFRHRHLVSLIGYCDENSE-MIIVYEYMEKGTLKDHLY-DLDDKPRLSWRQRLEICVGAARGLHYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHVSTAVKGSFGY 655          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.385e-26
Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHASD---IIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGY 425
            AVK+L   + +   +F+NE+ +++ L H NLV L+GC     Q LLLVYEFV N ++A  L G +     L WP R  I I  A  LAYLH      I+HRD+K  N+LLD     K++DFGL++L   D TH+ST   GT GY
Sbjct:  650 AVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQ-LLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHISTRIAGTFGY 792          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.095e-25
Identity = 68/147 (46.26%), Postives = 92/147 (62.59%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQL-HGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDV--THVSTAPQGTPGY 425
            AVKRL   + +  ++F  E+E+L++LRH +LVSL G     ++ ++LVYE++ +GT+ D L   D+     L+W  R+ I I  A  L YLH      IIHRD+KT NILLD NF  KV+DFGLSR+ P     THVST  +GT GY
Sbjct:  545 AVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNE-MVLVYEYMPHGTLKDHLFRRDKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGLSRVGPTSASQTHVSTVVKGTFGY 690          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: WAKLN_ARATH (Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.430e-25
Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGY 425
            AVK+    +  ++++F+NEV IL+++ H+++V L GC    ++  +LVYEF+ NG +   +H + +    + W +R+ IA++ A AL+YLH+S    I HRD+K+ NILLD  +  KVADFG SR   +D TH +T   GT GY
Sbjct:  479 AVKKSKVIDEDKLQEFINEVVILSQINHRHVVKLLGCCLE-TEVPMLVYEFIINGNLFKHIHEEESDDYTMLWGMRLRIAVDIAGALSYLHSSASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTIDQTHWTTVISGTVGY 621          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 66/151 (43.71%), Postives = 93/151 (61.59%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFG-CTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFP------LDVTHVSTAPQGTPGY 425
            A+KR  + + +  ++F+ E+E+L+RL H+NLVSL G C     Q  +LVYE++ NGT+ D +     +   L + +R+ IA+ +A  + YLH      I HRD+K +NILLDS F  KVADFGLSRL P      +   HVST  +GTPGY
Sbjct:  651 AIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQ--MLVYEYMENGTLRDNISVKLKEP--LDFAMRLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGY 797          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.440e-25
Identity = 66/144 (45.83%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGY 425
            AVK   D +     QF+ EV +L+R+ H+NLV L G      + +L VYE++ NG++ D LHG  + +  L W  R+ IA + A  L YLH      IIHRDVK++NILLD N   KV+DFGLSR    D+THVS+  +GT GY
Sbjct:  632 AVKITADPSSHLNRQFVTEVALLSRIHHRNLVPLIGYCEEADRRIL-VYEYMHNGSLGDHLHGS-SDYKPLDWLTRLQIAQDAAKGLEYLHTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLTHVSSVAKGTVGY 773          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.162e-25
Identity = 67/145 (46.21%), Postives = 87/145 (60.00%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLHAS---DIIHRDVKTNNILLDSNFCVKVADFGLSRLFPL-DVTHVSTAPQGTPGY 425
            AVK L  ++ +  ++F  EV++L R+ H NLVSL G        L L+YEFV NG +   L G   K  ++ W  R+ IA E A  L YLH      ++HRDVKT NILLD ++  K+ADFGLSR FP+   +HVST   GTPGY
Sbjct:  606 AVKLLSQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYCDE-GDHLALIYEFVPNGDLRQHLSGKGGKP-IVNWGTRLRIAAEAALGLEYLHIGCTPPMVHRDVKTTNILLDEHYKAKLADFGLSRSFPVGGESHVSTVIAGTPGY 748          
BLAST of CF510001 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.162e-25
Identity = 66/144 (45.83%), Postives = 89/144 (61.81%), Query Frame = 3
Query:    3 AVKRLYDNNYRRVEQFMNEVEILTRLRHKNLVSLFGCTSRYSQGLLLVYEFVANGTVADQLHGDRAKHGLLTWPIRMNIAIETASALAYLH---ASDIIHRDVKTNNILLDSNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGY 425
            AVKR    + + + +F  E+++L++LRH++LVSL G     S+ ++LVYEF++NG   D L+G       LTW  R+ I I +A  L YLH   A  IIHRDVK+ NILLD     KVADFGLS+       HVSTA +G+ GY
Sbjct:  552 AVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSE-MILVYEFMSNGPFRDHLYGKNLAP--LTWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVSTAVKGSFGY 692          
The following BLAST results are available for this feature:
BLAST of CF510001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
Y5389_ARATH8.385e-2646.94Probable receptor-like protein kinase At5g38990 OS... [more]
Y5169_ARATH8.385e-2647.62Probable LRR receptor-like serine/threonine-protei... [more]
Y2393_ARATH8.385e-2647.59Probable receptor-like protein kinase At2g39360 OS... [more]
Y1534_ARATH8.385e-2644.44Probable LRR receptor-like serine/threonine-protei... [more]
Y5900_ARATH1.095e-2546.26Putative receptor-like protein kinase At5g39000 OS... [more]
WAKLN_ARATH1.430e-2540.97Wall-associated receptor kinase-like 18 OS=Arabido... [more]
Y1684_ARATH1.868e-2543.71Probable LRR receptor-like serine/threonine-protei... [more]
Y1677_ARATH2.440e-2545.83Probable LRR receptor-like serine/threonine-protei... [more]
Y5596_ARATH4.162e-2546.21Probable LRR receptor-like serine/threonine-protei... [more]
Y4391_ARATH4.162e-2545.83Probable receptor-like protein kinase At4g39110 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-516 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510001 ID=CF510001; Name=CF510001; organism=Citrus sinensis; type=EST; length=426bp
TTGCAGTCAAGCGCCTATATGACAACAACTACAGAAGGGTTGAACAATTT
ATGAATGAAGTTGAAATCCTCACACGTTTGCGCCACAAAAATCTTGTCTC
CCTTTTTGGCTGCACCTCTCGTTACAGTCAGGGTCTCCTACTTGTGTATG
AATTTGTTGCCAATGGCACTGTTGCGGATCAACTCCATGGTGATCGAGCT
AAGCATGGTTTGCTGACATGGCCTATCCGTATGAACATTGCCATAGAAAC
TGCCAGTGCATTGGCATATCTTCATGCTTCTGATATCATTCATCGTGATG
TGAAGACTAACAACATTCTCCTTGACAGCAATTTTTGTGTCAAAGTTGCA
GATTTTGGGCTTTCGCGATTGTTCCCTTTAGATGTTACTCACGTCTCAAC
TGCACCACAAGGAACTCCAGGCTATG
back to top