CF510006 | Citrus Genome Database

Overview


Name	CF510006
Unique Name	CF510006
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	507

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSH---------------------LLSFNISHNHLHGELPVGGFFNTISPSSVSGNPSLCGSVVNRSCPAV----QNKPIVLNPNS 387
            L L  N LSG+IPS   N + L SL L  N  +G  P +   L+NL  +D+S N+ +G +P  + NL+H                     L+ FN+S+N+L+G +P     +  S  S +GN  LCG  + + C +        P ++NP++
Sbjct:   96 LSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLPSISLGLVDFNVSNNNLNGSIP--SSLSRFSAESFTGNVDLCGGPL-KPCKSFFVSPSPSPSLINPSN 244

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            L L  N   G +P +I NCSSL SL++ + NLTG +P+++  L  +  +DLS N LSG +P+EL N S L +  ++ N L GE+P
Sbjct:  249 LDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIP 333

HSP 2 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPV 264
            + L  N LSG IP ++ NCSSL +L L+ N L G +P A++ L  L+ ++L FN LSG +P  +  +  L    + +N L GELPV
Sbjct:  297 IDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPV 382

HSP 3 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            + L  N   G IP  + +C +L ++ LSQN LTG +P  + NL +L  ++LS N L G LP +L   + LL F++  N L+G +P
Sbjct:  488 VNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIP 572

HSP 4 Score: 67.0106 bits (162), Expect = 5.608e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            L L  N  SG +PS + NC+SL  L LS N+ +G VP    +L NL ++ L  N+LSG++P  +  L  L+   +S+N+L G +P
Sbjct:  105 LDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIP 189

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.022e-12
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPVGGFFNTISPSSVSGNPSLCGSVVNRSC 345
            L L+ N L+G IP  + + S L    LS+N L G +P    + + L  +DLS N LSG +P  L +   +   +ISHN L G +P G  F+ +  +S S N  LCG  +  SC
Sbjct:  260 LNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPLTTSC 372

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1

Query:   28 LSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP--VGGFFNTISPSSVSGN 309
            L+G I   I    +L  L LS  NLTGP+P  I+ L NL++++LSFNDLSG +P  L  L  +L+  +S N L G +P   G F  T+    +S N
Sbjct:  107 LTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHN 202

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 1

Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            K+L L +  LSG IP++I NC SL  L LS N LTG +P ++  L  L  + L+ N L G L   + NL++L  F + HN+L G++P
Sbjct:  340 KQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVP 426

HSP 2 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 1

Query:    4 ELKLEKNFLSGRIPSQIKNCSSLTSLI-LSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPVGGFFNTISPSSVSGNPSLCGSVVNRSCPAVQNKPIVLNPNS 387
            EL+L +N L+G IP +I     L S + LS NN TG +P+ I+ L  L+ +DLS N L G +P ++ ++  L   N+S+N+L G+L     F+     +  GN  LCGS ++    A       L+P +
Sbjct:  748 ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQ--FSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKT 874

HSP 3 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLK-YVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            L LE+N LSG +PS I   S L  L LS+N LTG +P  I  L +L+  +DLS+N+ +G +P  +  L  L S ++SHN L GE+P
Sbjct:  725 LNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVP 810

HSP 4 Score: 66.2402 bits (160), Expect = 9.566e-11
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1

Query:    4 ELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPV 264
            ELKL  N   G +P++I + +++ +L L  N+L G +P  I NL  L  ++L  N LSG LP  +  LS L    +S N L GE+PV
Sbjct:  676 ELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPV 762

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1

Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            K+L L  N LSG IP ++    +L +LIL  N+LTGP+PA+++N + L ++ LS N LSG +P  L  LS+L    + +N + G +P
Sbjct:  478 KDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIP 564

HSP 2 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1

Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            K L L+ N   G IP  + NCS L SL LS N LTG +P+++ +LS LK + L  N LSG +P+EL+ L  L +  +  N L G +P
Sbjct:  430 KVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIP 516

HSP 3 Score: 69.3218 bits (168), Expect = 1.130e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 1

Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            + L L+ N L+G IP+ + NC+ L  + LS N L+G +PA++  LSNL  + L  N +SG +P EL N   L+  +++ N L+G +P
Sbjct:  502 ENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIP 588

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1

Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            K+L L  N LSG IP ++    +L +LIL  N+LTGP+PA+++N + L ++ LS N LSG +P  L  LS+L    + +N + G +P
Sbjct:  478 KDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIP 564

HSP 2 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1

Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            K L L+ N   G IP  + NCS L SL LS N LTG +P+++ +LS LK + L  N LSG +P+EL+ L  L +  +  N L G +P
Sbjct:  430 KVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIP 516

HSP 3 Score: 69.3218 bits (168), Expect = 1.130e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 1

Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            + L L+ N L+G IP+ + NC+ L  + LS N L+G +PA++  LSNL  + L  N +SG +P EL N   L+  +++ N L+G +P
Sbjct:  502 ENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIP 588

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPVG-GFFNTISPSSVSGN------PSLCGSVVN 336
            L L    ++G +P  + N +SL +L LSQN+LT  VP+++  L NL  +DLS N  +G+LP+   +L +LL+ ++S N+L G +P G G  + +   + S N      PS  G +VN
Sbjct:  133 LDLSSCSVNGVVPFTLGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTGPIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVN 249

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPVGGFFNTISPSSVSGN 309
            L+L  N ++G IP ++ +   L SL L  N+++GP+P+++  L  L+++ L+ N LSG +P  L ++  L   +IS+N L G++PV G F+  +P S + N
Sbjct:  104 LELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSV-QLQVLDISNNRLSGDIPVNGSFSLFTPISFANN 203

[Close]

BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 1

Query:    7 LKLEKNFLSGRIPSQI-KNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPVGGFFNTISPSSVSGNPSLCGSVVNRS----CPAVQNKP 366
            L L  N L G+IP  + K  ++LT L ++ NNLTG +P +   L +L  +DLS N LSG +P + +NL +L    +++N+L G +P G  F T +  +VS N +L G V + +    C  V   P
Sbjct:  639 LNLSWNQLQGQIPGSLGKKMAALTYLSIANNNLTGQIPQSFGQLHSLDVLDLSSNHLSGGIPHDFVNLKNLTVLLLNNNNLSGPIPSG--FATFAVFNVSSN-NLSGPVPSTNGLTKCSTVSGNP 760

The following BLAST results are available for this feature:

BLAST of CF510006 vs. ExPASy Swiss-Prot

BLAST of CF510006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
Y2267_ARATH	7.825e-13	30.92	Probable inactive receptor kinase At2g26730 OS=Ara...	[more]
PEPR2_ARATH	7.825e-13	43.53	Leucine-rich repeat receptor-like protein kinase P...	[more]
DR100_ARATH	1.022e-12	37.17	DNA-damage-repair/toleration protein DRT100 OS=Ara...	[more]
PGIP1_ARATH	1.743e-12	41.67	Polygalacturonase inhibitor 1 OS=Arabidopsis thali...	[more]
GSO2_ARATH	1.743e-12	42.53	LRR receptor-like serine/threonine-protein kinase ...	[more]
BRI1_SOLPE	1.743e-12	41.38	Systemin receptor SR160 OS=Solanum peruvianum PE=1...	[more]
BRI1_SOLLC	1.743e-12	41.38	Brassinosteroid LRR receptor kinase OS=Solanum lyc...	[more]
Y2165_ARATH	2.277e-12	36.75	Probable LRR receptor-like serine/threonine-protei...	[more]
SERK4_ARATH	2.277e-12	35.64	Somatic embryogenesis receptor kinase 4 OS=Arabido...	[more]
RPK2_ARATH	2.277e-12	36.80	LRR receptor-like serine/threonine-protein kinase ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_125000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF510006 ID=CF510006; Name=CF510006; organism=Citrus sinensis; type=EST; length=507bp
AAGGAACTGAAGCTGGAGAAGAATTTCCTGTCTGGTAGAATTCCTTCTCA
AATCAAGAACTGCTCATCTCTGACATCTTTGATCCTGTCTCAGAACAACC
TCACTGGTCCAGTCCCTGCTGCCATTGCAAACCTTAGCAATCTTAAGTAT
GTAGACTTGTCTTTTAATGACCTCTCTGGAATATTACCCAAAGAACTTAT
AAATCTTTCCCACCTCCTGTCCTTTAATATCTCCCACAATCACCTACATG
GTGAACTACCAGTTGGGGGCTTCTTTAACACCATTTCCCCCTCATCTGTC
TCCGGGAATCCATCCCTGTGCGGATCTGTTGTTAACCGCTCATGTCCTGC
TGTTCAGAACAAGCCCATTGTCCTCAACCCCAACTCTTCCAACCCCTACA
CTGGCAACTCCTCCCCTAATCACCGTCGCAAGATTGGACTCAGCATCTCT
GCCCTCATTGCCATTGGGGCAGCTGCTTTTATTGCCATTGGTGTAATAGC
TGTTACT