CF510006

Overview
NameCF510006
Unique NameCF510006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 31/85 (36.47%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            L++ KN  SG IP++I + + +  +  ++N+ +G +P ++  L  L  +DLS N LSG +P+EL    +L   N+++NHL GE+P
Sbjct:  456 LRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPRELRGWKNLNELNLANNHLSGEIP 540          
BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHN-HLHGELPVGGFFNTISPSSVSGNPSL 318
            L L  N   G++P +I     L  L L++NN +G +P  I NL  L+ +DLSFN+ SG  P  L +L+ L  FNIS+N  + G +P  G   T    S  GNP L
Sbjct:  599 LHLGFNEFEGKLPPEIGQLP-LAFLNLTRNNFSGEIPQEIGNLKCLQNLDLSFNNFSGNFPTSLNDLNELSKFNISYNPFISGAIPTTGQVATFDKDSFLGNPLL 702          

HSP 2 Score: 67.0106 bits (162), Expect = 5.608e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            L L  N  SG++P++I    SL  LIL+ NN +G +P    N+  L+ +DLSFN L+G +P     L+ LL   +++N L GE+P
Sbjct:  378 LDLGYNNFSGQLPTEISQIQSLKFLILAYNNFSGDIPQEYGNMPGLQALDLSFNKLTGSIPASFGKLTSLLWLMLANNSLSGEIP 462          
BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = 1
Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPVGGFFNTISPSSVSGNPSLCGSV 330
            L L  N +SG  P        L  L L  NNL+GP+P   +   NL  V+LS N  +G +P  L  L  + S N+++N L G++P     +++    +S N  L G +
Sbjct:   98 LSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNTLSGDIPDLSVLSSLQHIDLSNNYDLAGPI 205          
BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPV 264
            L L +N LSG IP+++ NCSSL  L L+ N L G +P+A+  L  L+ ++L  N  SG +P E+     L    +  N+L GELPV
Sbjct:  320 LNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPV 405          
BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.608e-11
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    7 LKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELP 261
            L L  + L G IPS + +  +L SL LS N+  GP+P +  N   L+++DLS N +SG +P  + +L +LL+ N+S N L G+LP
Sbjct:   71 LSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLP 155          
BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.566e-11
Identity = 49/157 (31.21%), Postives = 73/157 (46.50%), Query Frame = 1
Query:    1 KELKLEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGELPV------------GGFFNTISPSSVSGNPSLC--GSVVN---RSCPAVQNKPIVLNPNSSNPYTGNSSPN 420
            + L L  N  +G IP  + +  SL+ + L+ N L+G +P    +L  +  +DLS N+LSG LP  + NLS L S  + +NHL GEL V               FN   P  +   P+    G++ N      P+ +  P   +P    P+ G  SPN
Sbjct:  125 QNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELDVLQDLPLKDLNVENNLFNGPIPEKLLSIPNFIKGGNLFNVTIAPSPSPETPPSPTSP--KRPFFGPPSPN 279          
BLAST of CF510006 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.566e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 LEKNFLSGRIPSQIKNCSSLTSLILSQNNLTGPVPAAIANLSNLKYVDLSFNDLSGILPKELINLSHLLSFNISHNHLHGEL 258
            L  + ++G+IP  IKN   L +L LS N ++G +P  I  L NL+ +++  NDL+G LP    NL++L +F+ S+N L G+L
Sbjct:  204 LSNSSITGKIPEGIKNLVRLQNLELSDNQISGEIPKEIVQLKNLRQLEIYSNDLTGKLPLGFRNLTNLRNFDASNNSLEGDL 285          
The following BLAST results are available for this feature:
BLAST of CF510006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RLK5_ARATH1.927e-1136.47Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
Y1743_ARATH3.288e-1140.00Probable LRR receptor-like serine/threonine-protei... [more]
Y4374_ARATH4.294e-1132.41Probable inactive receptor kinase At4g23740 OS=Ara... [more]
PEPR1_ARATH4.294e-1141.86Leucine-rich repeat receptor-like protein kinase P... [more]
Y4372_ARATH5.608e-1141.18Probable LRR receptor-like serine/threonine-protei... [more]
SRF1_ARATH9.566e-1131.21Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
IKU2_ARATH9.566e-1140.24Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510006 ID=CF510006; Name=CF510006; organism=Citrus sinensis; type=EST; length=507bp
AAGGAACTGAAGCTGGAGAAGAATTTCCTGTCTGGTAGAATTCCTTCTCA
AATCAAGAACTGCTCATCTCTGACATCTTTGATCCTGTCTCAGAACAACC
TCACTGGTCCAGTCCCTGCTGCCATTGCAAACCTTAGCAATCTTAAGTAT
GTAGACTTGTCTTTTAATGACCTCTCTGGAATATTACCCAAAGAACTTAT
AAATCTTTCCCACCTCCTGTCCTTTAATATCTCCCACAATCACCTACATG
GTGAACTACCAGTTGGGGGCTTCTTTAACACCATTTCCCCCTCATCTGTC
TCCGGGAATCCATCCCTGTGCGGATCTGTTGTTAACCGCTCATGTCCTGC
TGTTCAGAACAAGCCCATTGTCCTCAACCCCAACTCTTCCAACCCCTACA
CTGGCAACTCCTCCCCTAATCACCGTCGCAAGATTGGACTCAGCATCTCT
GCCCTCATTGCCATTGGGGCAGCTGCTTTTATTGCCATTGGTGTAATAGC
TGTTACT
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