CF510008

Overview
NameCF510008
Unique NameCF510008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.060e-19
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 545
            YYE+L+V R AS E+IK+AYRKLALKYHPD+N  N EA ++F  IN AY+VLSD E R +YD YG+ GL+     G
Sbjct:    6 YYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNPEAEEKFKLINEAYQVLSDEEKRALYDQYGKAGLENQGFSG 81          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLL2 (Chaperone protein dnaJ OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.060e-19
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 3
Query:  312 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            K YYEVL V R AS ++IK+AYRKLAL+YHPDKN  N++A + F E+N AYEVLS+ + R  YD +G  G+   AA G  G
Sbjct:    3 KDYYEVLGVSRSASKDEIKKAYRKLALQYHPDKNPDNKDAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGAGG 83          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.060e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  309 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            GK +Y++L + R ASD++IK+AYRKLALKYHPDKN+ + +A +RF EI  AYEVLSD + R+I+D YGE+GLK    G   G
Sbjct:    2 GKDFYKILGLERKASDDEIKKAYRKLALKYHPDKNK-SPQAEERFKEIAEAYEVLSDKKKRDIFDNYGEDGLKGGQPGPDGG 82          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNJB6_RAT (DnaJ homolog subfamily B member 6 OS=Rattus norvegicus GN=Dnajb6 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 548
            YYEVL V R AS E IK+AYRK ALK+HPDKN  N EEA ++F ++  AYEVLSD++ R+IYD YG+EGL     GGG
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGG 81          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNJB6_PONAB (DnaJ homolog subfamily B member 6 OS=Pongo abelii GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 545
            YYEVL V R AS E IK+AYRKLALK+HPDKN  N EEA ++F ++  AYEVLSD++ R+IYD YG+EGL     GG
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGG 80          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNJB6_MOUSE (DnaJ homolog subfamily B member 6 OS=Mus musculus GN=Dnajb6 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 548
            YYEVL V R AS E IK+AYRK ALK+HPDKN  N EEA ++F ++  AYEVLSD++ R+IYD YG+EGL     GGG
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGG 81          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNJB6_MACFA (DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 545
            YYEVL V R AS E IK+AYRKLALK+HPDKN  N EEA ++F ++  AYEVLSD++ R+IYD YG+EGL     GG
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGG 80          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNJB6_HUMAN (DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 545
            YYEVL V R AS E IK+AYRKLALK+HPDKN  N EEA ++F ++  AYEVLSD++ R+IYD YG+EGL     GG
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGG 80          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:  309 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 548
            GK YY+ L + RGASDE+IKRAYR+ AL+YHPDKN+    A ++F EI  AY+VLSD   R I+D YGEEGLK     GG
Sbjct:    2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGPSGG 80          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALTY (Chaperone protein dnaJ OS=Salmonella typhimurium GN=dnaJ PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84          
The following BLAST results are available for this feature:
BLAST of CF510008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_NITSB1.060e-1959.21Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_CHLL21.060e-1955.56Chaperone protein dnaJ OS=Chlorobium limicola (str... [more]
DNAJ1_DROME1.060e-1957.32DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DNJB6_RAT1.385e-1961.54DnaJ homolog subfamily B member 6 OS=Rattus norveg... [more]
DNJB6_PONAB1.385e-1962.34DnaJ homolog subfamily B member 6 OS=Pongo abelii ... [more]
DNJB6_MOUSE1.385e-1961.54DnaJ homolog subfamily B member 6 OS=Mus musculus ... [more]
DNJB6_MACFA1.385e-1962.34DnaJ homolog subfamily B member 6 OS=Macaca fascic... [more]
DNJB6_HUMAN1.385e-1962.34DnaJ homolog subfamily B member 6 OS=Homo sapiens ... [more]
DNJB1_BOVIN1.385e-1958.75DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]
DNAJ_SALTY1.385e-1950.00Chaperone protein dnaJ OS=Salmonella typhimurium G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-523 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510008 ID=CF510008; Name=CF510008; organism=Citrus sinensis; type=EST; length=556bp
CCTCGCCCAGTTCCTGGGACTTTTAACCGGCAACACCATCACCTGACCTC
ACTGATAATTTCCAAAGGAGAGAGAGAGAGAGAGAGAGACGACTTGCAGC
AACGACTTCTGAATTGACAGATAAAAATTAAAAAGAAAAAAATTATTGTA
ATCTCAGAATTTTGCTAAGATCTGAAAATTAAACCCTAGATTCTAAGTTT
CGGAGAGGCATTAAACTCTCTCCTCTTGTTGATCTATTAATGGCGCATCG
GCGAGCAAGGCTGTTGTTCCTATTGTGCGCACTTTGTTACGCCCTCAACG
TCATTGCGGGGAAGAGCTACTATGAAGTATTGCAAGTGCCGAGGGGAGCA
TCGGACGAGCAGATCAAAAGAGCGTATAGAAAGCTGGCATTGAAGTATCA
TCCTGATAAAAACCAGGGGAATGAAGAAGCTAATAAGCGATTTGCTGAGA
TTAACAATGCGTATGAGGTGTTATCGGATAGCGAAACGAGGAATATATAT
GATACATATGGAGAAGAGGGACTGAAACAGCATGCTGCTGGTGGAGGCAA
AGGTGG
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