CF510008

Overview
NameCF510008
Unique NameCF510008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALTI (Chaperone protein dnaJ OS=Salmonella typhi GN=dnaJ PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALSV (Chaperone protein dnaJ OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPC (Chaperone protein dnaJ OS=Salmonella paratyphi C (strain RKS4594) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPB (Chaperone protein dnaJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALNS (Chaperone protein dnaJ OS=Salmonella newport (strain SL254) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALHS (Chaperone protein dnaJ OS=Salmonella heidelberg (strain SL476) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALG2 (Chaperone protein dnaJ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALEP (Chaperone protein dnaJ OS=Salmonella enteritidis PT4 (strain P125109) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALDC (Chaperone protein dnaJ OS=Salmonella dublin (strain CT_02021853) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
[Close]
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SALCH (Chaperone protein dnaJ OS=Salmonella choleraesuis GN=dnaJ PE=3 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V + A + +IK+AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+D++ R  YD YG    +Q   GGG G
Sbjct:    1 MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFG 84
The following BLAST results are available for this feature:
BLAST of CF510008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_SALTI1.385e-1950.00Chaperone protein dnaJ OS=Salmonella typhi GN=dnaJ... [more]
DNAJ_SALSV1.385e-1950.00Chaperone protein dnaJ OS=Salmonella schwarzengrun... [more]
DNAJ_SALPC1.385e-1950.00Chaperone protein dnaJ OS=Salmonella paratyphi C (... [more]
DNAJ_SALPB1.385e-1950.00Chaperone protein dnaJ OS=Salmonella paratyphi B (... [more]
DNAJ_SALNS1.385e-1950.00Chaperone protein dnaJ OS=Salmonella newport (stra... [more]
DNAJ_SALHS1.385e-1950.00Chaperone protein dnaJ OS=Salmonella heidelberg (s... [more]
DNAJ_SALG21.385e-1950.00Chaperone protein dnaJ OS=Salmonella gallinarum (s... [more]
DNAJ_SALEP1.385e-1950.00Chaperone protein dnaJ OS=Salmonella enteritidis P... [more]
DNAJ_SALDC1.385e-1950.00Chaperone protein dnaJ OS=Salmonella dublin (strai... [more]
DNAJ_SALCH1.385e-1950.00Chaperone protein dnaJ OS=Salmonella choleraesuis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-523 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510008 ID=CF510008; Name=CF510008; organism=Citrus sinensis; type=EST; length=556bp
CCTCGCCCAGTTCCTGGGACTTTTAACCGGCAACACCATCACCTGACCTC
ACTGATAATTTCCAAAGGAGAGAGAGAGAGAGAGAGAGACGACTTGCAGC
AACGACTTCTGAATTGACAGATAAAAATTAAAAAGAAAAAAATTATTGTA
ATCTCAGAATTTTGCTAAGATCTGAAAATTAAACCCTAGATTCTAAGTTT
CGGAGAGGCATTAAACTCTCTCCTCTTGTTGATCTATTAATGGCGCATCG
GCGAGCAAGGCTGTTGTTCCTATTGTGCGCACTTTGTTACGCCCTCAACG
TCATTGCGGGGAAGAGCTACTATGAAGTATTGCAAGTGCCGAGGGGAGCA
TCGGACGAGCAGATCAAAAGAGCGTATAGAAAGCTGGCATTGAAGTATCA
TCCTGATAAAAACCAGGGGAATGAAGAAGCTAATAAGCGATTTGCTGAGA
TTAACAATGCGTATGAGGTGTTATCGGATAGCGAAACGAGGAATATATAT
GATACATATGGAGAAGAGGGACTGAAACAGCATGCTGCTGGTGGAGGCAA
AGGTGG
back to top