CF510010

Overview
NameCF510010
Unique NameCF510010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510010 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.497e-14
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 2 
Query:  266 DSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQM 517
            ++W+   A Q PEYP+ E L +V+  L+ +PP+VFAG              G+AFLLQGGDCAE+F   +A++IR+  + LLQM
Sbjct:   13 NTWRDLPAAQQPEYPDTEALRAVIADLESYPPLVFAGECDQLRARMAAVAKGEAFLLQGGDCAEAFDAVSADHIRNKLKTLLQM 96
[Close]
BLAST of CF510010 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 38/87 (43.68%), Postives = 43/87 (49.43%), Query Frame = 2 
Query:  257 WTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQM 517
            W  DSW+SK   Q PEYP+K  LE     L   PPIV                 GKAFLLQGGDCAE F     + I    ++LLQM
Sbjct:   12 WAPDSWRSKPIKQCPEYPDKAALEKATNELKTLPPIVLPNEIIRLREHLRDVAQGKAFLLQGGDCAELFSYCQQDVIESKIKLLLQM 98
The following BLAST results are available for this feature:
BLAST of CF510010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AROF_STRCO1.497e-1444.05Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR4.817e-1343.68Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-525 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510010 ID=CF510010; Name=CF510010; organism=Citrus sinensis; type=EST; length=518bp
AGAAATTCGTTTCATTTACATTTCAACAAAAATAAATTAGAACATTATGG
CTCTCGTTGGCAGTACTTCAATTACTCCCACAAAATCATCCTTCGTTCAG
CCACAATCTCAGCCGTTCATCACCAAACCCAGATCAAATATCCATCCCAT
CTCCGCCGTCCATGCTGCTGACTCTGCCAAGCCACCGTCTGCCGTAAAAA
CCACAACAAAGGCACCCGAGCCAGTCCTCAAGACCAGCAATGTGGGTCCC
CAAAAATGGACGGTTGACAGCTGGAAATCCAAGAAGGCTTTGCAGCTGCC
GGAGTATCCAAACAAAGAGGAGCTCGAGTCCGTGCTGAAAACGCTCGACG
ATTTCCCGCCGATTGTGTTCGCCGGTGAAGCCAGGAGCTTGGAGGAGCGG
CTAGCTGAAGCCGCCATGGGCAAAGCTTTCTTGCTTCAAGGCGGTGATTG
CGCTGAGAGTTTCAAAGAGTTTAATGCTAATAACATTCGTGACACTTTCA
GAATCCTTCTCCAGATGG
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