CF510014

Overview
NameCF510014
Unique NameCF510014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.008e-22
Identity = 52/114 (45.61%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPK-DGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANR-LGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            DP PLQD CV+        +F+NGK CKDP  A   DF  S L +PGNT  +    +VT      +PGLNT+G++  R+D+   G  PPH HPRA+E+ V L+G L VGFV ++
Sbjct:   19 DPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTS 132          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.004e-22
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVN-------GKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            DP P+QD CVA+  P+ G           G  CK      ++DFF +GL    +T NR GF+VT AN E  PGLNTLG+S  R+D AP G NP H+HPRATE++ V+ G +  GFV++
Sbjct:   26 DPEPVQDFCVAVV-PRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVST 142          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.456e-21
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            D  PLQDICVA  D +    V+G  CK      ++DFF   + +  +T+N  G + T A V   PGLNTLG+S  R D AP G NPPH+HPRA+E+++VL G + VGF T+
Sbjct:   30 DSPPLQDICVA--DLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTA 138          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.610e-20
Identity = 55/110 (50.00%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNT-ANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFV 434
            D  PLQD CVA  D K  V VNG  CK    A  E  F S +   G+  AN  G +VT  +V + PG+NTLG+S  R+D+AP G NPPH HPRATE+ +VL G L VG +
Sbjct:   30 DADPLQDFCVADLDSK--VTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGII 137          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.610e-20
Identity = 55/110 (50.00%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNT-ANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFV 434
            D  PLQD CVA  D K  V VNG  CK    A  E  F S +   G+  AN  G +VT  +V + PG+NTLG+S  R+D+AP G NPPH HPRATE+ +VL G L VG +
Sbjct:   30 DADPLQDFCVADLDSK--VTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGII 137          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.102e-20
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKF----CKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            DP P+QD CVA+  P+ G   +  +    CK      ++DFF +GL   G+T N  G S+   NVE  P LNTLG++  R+D AP G NP H+HPRA E++ V+ G + VGFV++
Sbjct:   36 DPEPIQDFCVAV--PRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVST 148          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.746e-20
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNT-ANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            DP PLQD CVA  D +  V +NG  CK    A  E  F S L   G+  AN  G +VT  +V   PG+NTLG+S  RID+AP G NPPH HPRATE+ +VL G L VG + S
Sbjct:   28 DPDPLQDFCVADLDSE--VTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGS 137          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.586e-20
Identity = 54/110 (49.09%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNT-ANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFV 434
            D  PLQD CVA  D    V VNG  CK    A  E  F S +   G+  AN  G +VT  +V + PG+NTLG+S  R+D+AP G NPPH HPRATE+ +VL G L VG +
Sbjct:   28 DADPLQDFCVA--DLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGII 135          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.178e-19
Identity = 52/115 (45.22%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  108 DPSPLQDICVA--INDP-KDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            DP P+QD C+   +  P  D  F     CK+      EDF  SGL   GN     GF+      E  PGLNTLGIS VR D  P   NPPH HPRATE+  +++G +Y GFV SN
Sbjct:   26 DPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTET-GFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSN 139          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.763e-19
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  114 SPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            +P QD CVA  D +     +G  CK      +EDFF SGL+ P NT+N  G +   AN+   PGLNTLGIS   +  AP G N PH+HP  TE  VV+EG++ VGF+T+N
Sbjct:   38 NPFQDFCVA--DLQATPTNSGYPCKSQ--VTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTN 143          
The following BLAST results are available for this feature:
BLAST of CF510014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GL11_ARATH1.008e-2245.61Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL38_ORYSJ5.004e-2246.61Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL12_ORYSJ1.456e-2146.85Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ1.610e-2050.00Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ1.610e-2050.00Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL37_ORYSJ2.102e-2043.48Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL33_ORYSJ2.746e-2050.89Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ3.586e-2049.09Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL32_ARATH5.178e-1945.22Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GLT3_ARATH6.763e-1947.27Germin-like protein subfamily T member 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510014 ID=CF510014; Name=CF510014; organism=Citrus sinensis; type=EST; length=446bp
ACACTACCCAAAAAAAAAATTGATATAAATTAATCAAAATGAAAGCTGTT
CAATTTCTTTCAGGTTTTGCTCTCTTGGCTTTGGCTTCTTTATTGGCCTC
TGCCTATGACCCCAGCCCTCTTCAAGATATCTGTGTCGCCATCAATGATC
CCAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTT
GCGAAAGCAGAAGATTTCTTTTTATCAGGGCTAGACAAGCCTGGAAACAC
AGCAAATCGACTTGGCTTTAGTGTGACAAATGCAAATGTTGAGCAAATTC
CAGGACTTAACACTCTTGGCATATCAGCAGTCCGTATTGACTACGCGCCA
TACGGTCAAAATCCACCTCACACTCACCCCCGTGCCACTGAAATCCTGGT
GGTCCTGGAAGGAACTCTTTATGTTGGTTTTGTGACATCGAACCAA
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