CF510014

Overview
NameCF510014
Unique NameCF510014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.507e-18
Identity = 52/107 (48.60%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            +QD CVA  + K      G  C  P   KA DF  SGL  PGNT N +  +VT A   Q PGLN LG+S  R+D AP G  P HTHP A+E+L VL G++  GFV+S
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSS 123          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.968e-18
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            +QD CVA     DG    G  CK P +    DF  SGL   GNT N    +VT A   Q PG+N LGIS  R+D  P G  P HTHP A+E+L+V++GT+  GFV S+
Sbjct:   20 VQDFCVADYKAPDGPA--GYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD 125          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.384e-18
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            + D CVA N P      +G  CK+     A DF  SGL KPGNT N +  +VT A V Q PG+  LG++  R+D AP G  P HTHP A+EIL V+EGT+   F++S
Sbjct:   24 VNDFCVA-NGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS 129          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.384e-18
Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            +QD CVA     +G    G  CK P   K  DF  SGL   GNT+N +  +VT A V Q PG+N LGIS  R+D A  G  P HTHP A+E+L+V +GT+  GFV S+
Sbjct:   25 VQDFCVADLAAPEGPA--GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD 130          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.384e-18
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            +QD CVA     DG    G  CK P      DF  SGL   GNT N +  +VT A   Q PG+N LGIS  R+D  P G  P HTHP A+E+L+V++GT+  GFV S+
Sbjct:   20 VQDFCVADYKAPDGPA--GYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD 125          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            +QD CVA  DPK     +G  CK+P      DF  SGL K GNT+N +  +VT A      GLN L +S  R+D A  G  P HTHP A+E+LVV++GT+  GF++S
Sbjct:   22 VQDFCVA--DPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS 126          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.666e-17
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            +QD CVA  DPK     +G  CK+P      DF  +GL   GNT+N +  +VT A      G+N LG+S  R+D A  G  P HTHP A+E+LVV++GT+  GF++S
Sbjct:   22 VQDFCVA--DPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS 126          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            D   +QD C      +   F+NG  CK+P    A+DF  + L + G+T N L  +VT     + PGLNTLG+S  R D    G  P H+HPR++E+L V++G ++ GFV +N
Sbjct:   19 DSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTN 130          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.405e-16
Identity = 50/107 (46.73%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  120 LQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            +QD CVA  + K      G  C  P   KA DF  S L  PGNT N +  +VT   V Q P LN LGIS  R+D AP G  P HTHP A+E+L VL+G++  GF++S
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS 122          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.103e-16
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGF 431
            D  PLQD+C      +  +F+NG FCK P    A DF    L+  G+  N +  S       + PGLNTLGIS  R D A  G   PH+HPRA+E++ V  G++  GF
Sbjct:   24 DSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGF 131          
The following BLAST results are available for this feature:
BLAST of CF510014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GL31_ARATH1.507e-1848.60Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
AB19B_PRUPE1.968e-1846.30Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GLP1_IPONI4.384e-1846.73Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
ABP20_PRUPE4.384e-1847.22Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
AB19A_PRUPE4.384e-1846.30Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GLP1_SINAL5.725e-1845.79Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL33_ARATH1.666e-1743.93Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GL34_ARATH1.842e-1639.29Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GLP1_BRANA2.405e-1646.73Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL111_ORYSJ4.103e-1640.74Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510014 ID=CF510014; Name=CF510014; organism=Citrus sinensis; type=EST; length=446bp
ACACTACCCAAAAAAAAAATTGATATAAATTAATCAAAATGAAAGCTGTT
CAATTTCTTTCAGGTTTTGCTCTCTTGGCTTTGGCTTCTTTATTGGCCTC
TGCCTATGACCCCAGCCCTCTTCAAGATATCTGTGTCGCCATCAATGATC
CCAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTT
GCGAAAGCAGAAGATTTCTTTTTATCAGGGCTAGACAAGCCTGGAAACAC
AGCAAATCGACTTGGCTTTAGTGTGACAAATGCAAATGTTGAGCAAATTC
CAGGACTTAACACTCTTGGCATATCAGCAGTCCGTATTGACTACGCGCCA
TACGGTCAAAATCCACCTCACACTCACCCCCGTGCCACTGAAATCCTGGT
GGTCCTGGAAGGAACTCTTTATGTTGGTTTTGTGACATCGAACCAA
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