CF510014

Overview
NameCF510014
Unique NameCF510014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.141e-16
Identity = 50/117 (42.74%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  108 DPSPLQDICVAINDPKD--GVF-VNGKFCKDPKLAKAEDFFLSGLDKPGNTANRL-GFSVT-NANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            DP  L D CVA        G F +NG  C DP LA+A+ F  S L +  N A  L GF+ T  +    +PG N  G++  RID AP G  PPH+HPRA+E  +VL G++ VGF  ++
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTS 139          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.194e-15
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  108 DPSPLQDICV---AINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDY-APYGQNPPHTHPRATEILVVLEGTLYVGFVTS 440
            DP  +QD CV       P +   +    C+ P    A DF  SG+   GN +   GF+  +    Q PGL+TLG+S  R D  A  G NPPH HPRATE  +VL G +Y GFV S
Sbjct:   24 DPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDS 138          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.925e-15
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  123 QDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            QD CVA N P      +G  C+      A DF+   L +PG        S+ +A V+Q P +N LGISA R+D  P G  P HTHP  +E+L VL+G L  GF++S+
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS 134          
BLAST of CF510014 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.724e-14
Identity = 50/107 (46.73%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  123 QDICVAINDPKDGVFVNGKFCKDPKLAKAEDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 443
            QD CVA     D     G  CK      A DF   GL   GNT+N +  +VT A V Q PG+N LGISA R+D A  G  P HTHP A+E+L V +GT+  GF+TS+
Sbjct:   26 QDFCVADLTCSDTPA--GYPCKAS--VGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS 128          
The following BLAST results are available for this feature:
BLAST of CF510014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GL31_ORYSJ9.141e-1642.74Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL24_ORYSJ1.194e-1541.74Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL813_ORYSJ5.925e-1541.12Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL814_ORYSJ1.724e-1446.73Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510014 ID=CF510014; Name=CF510014; organism=Citrus sinensis; type=EST; length=446bp
ACACTACCCAAAAAAAAAATTGATATAAATTAATCAAAATGAAAGCTGTT
CAATTTCTTTCAGGTTTTGCTCTCTTGGCTTTGGCTTCTTTATTGGCCTC
TGCCTATGACCCCAGCCCTCTTCAAGATATCTGTGTCGCCATCAATGATC
CCAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTT
GCGAAAGCAGAAGATTTCTTTTTATCAGGGCTAGACAAGCCTGGAAACAC
AGCAAATCGACTTGGCTTTAGTGTGACAAATGCAAATGTTGAGCAAATTC
CAGGACTTAACACTCTTGGCATATCAGCAGTCCGTATTGACTACGCGCCA
TACGGTCAAAATCCACCTCACACTCACCCCCGTGCCACTGAAATCCTGGT
GGTCCTGGAAGGAACTCTTTATGTTGGTTTTGTGACATCGAACCAA
back to top