CF510017

Overview
NameCF510017
Unique NameCF510017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.773e-25
Identity = 53/114 (46.49%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 447
            M  R++  LK+II+G  GVGKTSL++QYV+K F  +Y+ T+GA  L+K +  +D    LQIWDT GQERF+S+   FY+G+D C+L +DV   +SF+ L+ WR++ L +  P +
Sbjct:    1 MNPRKKVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPME 114          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.160e-25
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 447
            M  R++  LK+II+G  GVGKTSL++QYV+K F  +Y+ T+GA  L+K +   D    LQIWDT GQERF+S+   FY+G+D C+L +DV  ++SF+ L+ WR + L +  P +
Sbjct:    1 MNPRKKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME 114          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.368e-24
Identity = 51/113 (45.13%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  112 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 450
            ++ R ++KV+I+G+  VGKTS++ +YV+K+F    K TIG DF    V   + + TLQ+WDT+GQERF+SL +++YRGAD C+LV+DV + K+  +L  WR++F+ +    DP
Sbjct:    2 TKGRKIIKVVIIGEKSVGKTSILRRYVDKRFVT-LKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDP 109          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.731e-24
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 438
            L K++++GDSGVGKT L+ ++    F+N Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.660e-23
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 438
            L K++++GDSGVGKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.660e-23
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 438
            L K++++GDSGVGKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.698e-23
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 438
            L K++++GDSGVGKT L+ ++    F++ Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.307e-23
Identity = 45/106 (42.45%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            LLK++++GDSGVGK+ ++ ++ + +F++ Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD+ SM SF+++  W  +    ASPS
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPS 138          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.307e-23
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 438
            L K++++GDSGVGKT L+ ++    F++ Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.238e-23
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            L K++++GDSGVGK+++++++    FS   K+TIG +F TK +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFDN++ W  E    A  S
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSS 117          
The following BLAST results are available for this feature:
BLAST of CF510017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7B_MOUSE1.773e-2546.49Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB7B_HUMAN5.160e-2546.49Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RAB7B_DICDI4.368e-2445.13Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAB13_MESAU9.731e-2447.12Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN1.660e-2347.12Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN1.660e-2347.12Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_RAT3.698e-2346.15Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB1C_DICDI6.307e-2342.45Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB13_MOUSE6.307e-2346.15Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RGP2_ORYSJ8.238e-2344.34Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510017 ID=CF510017; Name=CF510017; organism=Citrus sinensis; type=EST; length=456bp
CGCACGCAGAGCCTCAATAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAAT
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