CF510017

Overview
NameCF510017
Unique NameCF510017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.405e-22
Identity = 45/106 (42.45%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  +D++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N+  W +E      P+
Sbjct:   13 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPN 118          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.835e-22
Identity = 45/98 (45.92%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            L K++I+GDS VGK++L+N++   +F+ + KATIG DF TK ++ +++  T Q WDTAGQERF+++   +YRGA   ++VYD+ S  SF N+  W  E
Sbjct:   10 LFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNE 107          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.397e-22
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   V+VYDV S +SF N   W +E
Sbjct:   11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDE 106          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.130e-22
Identity = 45/106 (42.45%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +Q + ++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N+  W +E      P+
Sbjct:   14 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPN 119          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 438
            L+K++++GDSGVGK+ L+ ++ +  F++ +  TIG DF  K+V  + +L  LQIWDTAGQERF+++  A+YRGA   +LVYD+    SF+N+ NW       AS
Sbjct:   13 LIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHAS 116          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF 423
            LK+I++GD  VGKTS++++ +  KF+ +YK+TIGADFL+K     D +  +Q+WDTAGQE++  L  AF+R +D  +LV+D+++  SF NLN W ++F
Sbjct:   10 LKLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQF 107          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102          
The following BLAST results are available for this feature:
BLAST of CF510017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA1C_ARATH1.405e-2242.45Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11C_DICDI1.835e-2245.92Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RBH1B_ARATH2.397e-2251.04Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ3.130e-2242.45Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPTV2_VOLCA5.340e-2245.19GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RB32D_DICDI5.340e-2246.94Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RAB8B_RAT5.340e-2247.37Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB5.340e-2247.37Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE5.340e-2247.37Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN5.340e-2247.37Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510017 ID=CF510017; Name=CF510017; organism=Citrus sinensis; type=EST; length=456bp
CGCACGCAGAGCCTCAATAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAAT
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