CF510017

Overview
NameCF510017
Unique NameCF510017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQERF++L   +YRG+   ++VYD+   ++F  L NW +E      P+
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPN 110          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  121 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFL 426
            +T+LK+I LGDS VGKTSL   YVN ++      +IG D+  KE++ E++   L +WDT GQERFQ+    ++RGA+C  L +D+++ +SF NL  W +E +
Sbjct:    5 KTMLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEII 106          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            T LK++I+G+SGVGK+SLM ++V+  F  +  ATIG DF    +  +     L IWDTAGQERF++L  ++YRGA   + VYDV S  SF+ LN+W +E
Sbjct:   10 TTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQE 108          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21
Identity = 45/98 (45.92%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            L KV+++GDSGVGK++L++++   +F  + K+TIG +F T+ +Q E R    QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N++ W +E
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 109          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21
Identity = 44/99 (44.44%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            T  K++ LG+ GVGKTSL+ +++   F + Y+ATIG DFL+K +  +D+   LQ+WDTAGQERF+SL  ++ R +   ++VYD+   KSF+ ++ W E+
Sbjct:    9 TKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIED 107          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21
Identity = 43/95 (45.26%), Postives = 69/95 (72.63%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  + ++ + +   LQ+WDTAGQERF+++  A+YRGA   VL+YDV   +SF+N+ NW
Sbjct:   14 IMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENW 108          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21
Identity = 42/98 (42.86%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE 109          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21
Identity = 42/98 (42.86%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE 109          
The following BLAST results are available for this feature:
BLAST of CF510017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CANFA9.108e-2246.32Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN9.108e-2246.32Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RB22A_HUMAN1.190e-2143.81Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RABL_DICDI1.190e-2144.12Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAB18_CAEEL1.190e-2148.48Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]
RAA2A_ARATH1.190e-2145.92Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPT6_YEAST1.554e-2144.44GTP-binding protein YPT6 OS=Saccharomyces cerevisi... [more]
SEC4_CANAL1.554e-2145.26Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RB2BV_BETVU1.554e-2142.86Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA1.554e-2142.86Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510017 ID=CF510017; Name=CF510017; organism=Citrus sinensis; type=EST; length=456bp
CGCACGCAGAGCCTCAATAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAAT
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