CF510017

Overview
NameCF510017
Unique NameCF510017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  118 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            R  L KV+++GD+ VGKTSL+ +Y    FS  YK+T+G DF  K +Q+ D  +  LQ+WD AGQERF S+   +YR A  CV+++DV +  +F N   W+++
Sbjct:    4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQD 105          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB7L_MOUSE (Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  118 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            R  L KV+++GD+ VGKTSL+ +Y    FS  YK+T+G DF  K +Q+ D  +  LQ+WD AGQERF S+   +YR A  CV+++DV +  +F N   W+++
Sbjct:    4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQD 105          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  118 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            R  L KV+++GD+ VGKTSL+ +Y    FS  YK+T+G DF  K +Q+ D  +  LQ+WD AGQERF S+   +YR A  CV+++DV +  +F N   W+++
Sbjct:    4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQD 105          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 41/101 (40.59%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQ 432
            +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 110          
The following BLAST results are available for this feature:
BLAST of CF510017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7L_PONAB3.461e-2144.12Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_MOUSE3.461e-2144.12Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab... [more]
RAB7L_HUMAN3.461e-2144.12Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
RAB5A_PIG3.461e-2145.19Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE3.461e-2145.19Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA3.461e-2145.19Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN3.461e-2145.19Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA3.461e-2145.19Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN3.461e-2145.19Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB23_MOUSE3.461e-2140.59Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510017 ID=CF510017; Name=CF510017; organism=Citrus sinensis; type=EST; length=456bp
CGCACGCAGAGCCTCAATAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAAT
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