CF510017

Overview
NameCF510017
Unique NameCF510017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 42/98 (42.86%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+  Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE 109          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 41/98 (41.84%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            L K +++GDSGVGK++L+ ++   +F+ + K+TIG +F T+ +  +++    QIWDTAGQER++++  A+YRGA   ++VYD+    SFDN+  W +E
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKE 107          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 41/101 (40.59%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQ 432
            +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAE 110          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 42/98 (42.86%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 420
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + V+ + ++  LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE 105          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 444
            LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQE F++L   +YRG+   ++VYD+   ++F  L NW +E      P+
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPN 110          
BLAST of CF510017 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  109 PSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 411
            P+R R     L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW
Sbjct:    5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109          
The following BLAST results are available for this feature:
BLAST of CF510017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA2C_ARATH3.461e-2142.86Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPT3_SCHPO4.520e-2141.84GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB5B_PONAB4.520e-2144.23Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE4.520e-2144.23Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN4.520e-2144.23Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB5B_CHICK4.520e-2144.23Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB23_HUMAN4.520e-2140.59Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]
YPTC1_CHLRE5.904e-2142.86GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RB22A_CANFA5.904e-2142.86Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RB1BV_BETVU5.904e-2143.81Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510017 ID=CF510017; Name=CF510017; organism=Citrus sinensis; type=EST; length=456bp
CGCACGCAGAGCCTCAATAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAAT
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