CF510025

Overview
NameCF510025
Unique NameCF510025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.952e-43
Identity = 74/133 (55.64%), Postives = 92/133 (69.17%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSG-LNKPGNTT-NRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLN--NTLITKVLHEGRCF 448
            DPS LQD+CVA  D    V VNG  CKD K  + +DFFL+  L+KP + T ++ G N T  NV ++ GLNTLG+S  RIDYAP GQ+PPH HPRA+EIL V+EG+LY GFVTS+  N  N L TK L++G  F
Sbjct:   24 DPSPLQDLCVA--DKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVF 154          

HSP 2 Score: 63.1586 bits (152), Expect = 4.952e-43
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  435 RGDVFVFPIGLIHFHVNIGKTS-AVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            +GDVFVFP GLIHF  N      A A   L+SQ PG ITIA+ +FG++P I  D LAKAF
Sbjct:  150 KGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAF 209          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.629e-41
Identity = 71/129 (55.04%), Postives = 83/129 (64.34%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            DP  LQD+CVA  D    V +NG  CK     TA+DFF +GL  PGNT N  G N T ANV+  PG+NTLGVS  RIDYAP GQ+PPH HPRA+EI+ VLEG L  GF+T+    N L TK +  G  F
Sbjct:   26 DPDMLQDVCVA--DLASPVKLNGFPCKAN--VTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITT---ANKLFTKTVTAGEVF 147          

HSP 2 Score: 57.3806 bits (137), Expect = 2.629e-41
Identity = 29/58 (50.00%), Postives = 34/58 (58.62%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            G+VFVFP GL+HF  N G   A   +  NSQ  G   IA T+F A P +  D LAKAF
Sbjct:  144 GEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAF 201          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.423e-41
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 2
Query:   62 DPSRLQDICVA-IEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            DP  LQD+CVA  +  K  + +NG  CK  +  TA DFF  GL K GNT N +G   T A+VE +PGLNT+GVS  RIDYAP G +PPH HPRA+EI+ V+EG+L  GFVT+    N L T+ + +G  F
Sbjct:   24 DPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTT---ANKLFTRTVCKGEVF 150          

HSP 2 Score: 65.855 bits (159), Expect = 3.423e-41
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  435 RGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            +G+VFVFP GL+HF  N G T A A + LNSQ PG  +IA  +FGA P +  D LA+AF
Sbjct:  146 KGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAF 204          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.829e-40
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            DP  LQDICVA  D    V VNG  CK     T +DF+  GL   GNT N  G   T ANVE++PGLNTLGVS  RIDYAP G +PPH HPRA+E++ VL+GTL  GF+T+    N L TK +  G  F
Sbjct:   27 DPDLLQDICVA--DLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITT---ANKLYTKTISAGDVF 148          

HSP 2 Score: 61.6178 bits (148), Expect = 4.829e-40
Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            GDVFVFP GL+HF  N G T A   S  NSQ PG  ++A T+F A P +    L KAF
Sbjct:  145 GDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAF 202          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.391e-39
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            D   LQD+CVA  D    V VNG  CK     TA DF    ++KPG T N+ G   T ANVEQ+PGLNTLGVS  RIDYAP G +PPH HPRASE++ V+EG L  GF+T+ N+   L++K + +G  F
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANV---LVSKQITKGEVF 155          

HSP 2 Score: 63.1586 bits (152), Expect = 1.391e-39
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  435 RGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            +G+VFVFP GL+HF  N GK  A   S  NSQ PG  +I  T+FGA P +  D LA+ F
Sbjct:  151 KGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTF 209          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.363e-39
Identity = 68/130 (52.31%), Postives = 85/130 (65.38%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNR-LGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            D + LQD CVA  D  +G+ VNG  CKDP   T EDF+  GL     T N  +G   T ANVE++PGLNTLGVS  RIDYAP G +PPH+HPRASE + VLEG L+ GF+T+      LI+K +++G  F
Sbjct:   23 DTNMLQDFCVA--DLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTT---TGKLISKHVNKGDVF 147          

HSP 2 Score: 58.5362 bits (140), Expect = 2.363e-39
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 3
Query:  423 KFCMRGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            K   +GDVFVFP  L+HF  N  K  A   +  +SQ PG   +  ++FG++P I  D LAKAF
Sbjct:  139 KHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAF 201          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.801e-39
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            D   LQD+CVA  D    V VNG  CK     TA DF    ++KPG T N+ G   T ANVEQ+PGLNTLGVS  RIDYAP G +PPH HPRASE++ V+EG L  GF+T+ N+   L++K + +G  F
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANV---LVSKKIIKGEVF 155          

HSP 2 Score: 62.3882 bits (150), Expect = 6.801e-39
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 3
Query:  423 KFCMRGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            K  ++G+VFVFP GL+HF  N G+  A   S  NSQ PG  +I  T+FGA P +  D LA+ F
Sbjct:  147 KKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTF 209          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.808e-39
Identity = 68/129 (52.71%), Postives = 81/129 (62.79%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            D   LQD+CVA  D    + VNG  CK     TAEDFF + L K G T N  G   T ANV++IPGLNTLGVS  RIDYAP G +PPH HPRA+E++ VLEG L  GF+T+    N LI K + +G  F
Sbjct:   22 DADALQDLCVA--DYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITT---TNQLIAKTIAKGETF 145          

HSP 2 Score: 58.151 bits (139), Expect = 6.808e-39
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 3
Query:  423 KFCMRGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            K   +G+ FVFP GL+HF  N G   A   +G NSQ PG + I  T+F A P +  + L KAF
Sbjct:  137 KTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAF 199          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.505e-38
Identity = 68/130 (52.31%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   59 YDPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            YDP  LQD+CVA  D   G+ VNG  CK     TA DFF +G+ KP    N +G   T ANVE+I GLNTLGVS  RIDYAP G +PPH HPRA+E++ VLEG L  GF+T+    N L  K + +G  F
Sbjct:   22 YDPDTLQDLCVA--DRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITT---ANKLFAKTVKKGEVF 146          

HSP 2 Score: 49.6766 bits (117), Expect = 1.505e-38
Identity = 29/64 (45.31%), Postives = 34/64 (53.12%), Query Frame = 3
Query:  423 KFCMRGDVFVFPIGLIHFHVNIGKTS-AVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            K   +G+VFVFP GLIH+  N  K   A   S  NSQ PG  +IA T+F A P I    L   F
Sbjct:  138 KTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTF 201          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.962e-38
Identity = 69/125 (55.20%), Postives = 81/125 (64.80%), Query Frame = 2
Query:   74 LQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            LQD+CVA  D  + V VNG  CKD    T EDF+  GL     T    G   T ANVE++PGLNTLG+S  RIDYAPNG +PPH+HPRASEI+ VLEG LY GFVT+      LI K L++G  F
Sbjct:   25 LQDVCVA--DLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTT---AGKLIAKNLNKGDVF 144          

HSP 2 Score: 53.1434 bits (126), Expect = 1.962e-38
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  435 RGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            +GDVF FP GLIHF  NI  + A   +  +SQ PG  ++  ++FGA P    D LAK+F
Sbjct:  140 KGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGALP---DDILAKSF 195          
The following BLAST results are available for this feature:
BLAST of CF510025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL123_ORYSJ4.952e-4355.64Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL11_ORYSJ2.629e-4155.04Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL13_ORYSJ3.423e-4151.54Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL52_ORYSJ4.829e-4053.49Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
NEC1_NICPL1.391e-3951.94Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL23_ARATH2.363e-3952.31Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
NEC1_NICLS6.801e-3951.94Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
RHRE_PEA6.808e-3952.71Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL24_ARATH1.505e-3852.31Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL25_ARATH1.962e-3855.20Probable germin-like protein subfamily 2 member 5 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510025 ID=CF510025; Name=CF510025; organism=Citrus sinensis; type=EST; length=613bp
AATTCAATTTCTTCTAGGTTTTGCTCTCTTGGCTTTGGCTTCTTCTTTGG
CCTCTGCCTATGACCCTAGCCGTCTTCAAGATATCTGTGTAGCCATCGAG
GACCCGAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAA
GCTTGCGACAGCTGAAGATTTCTTCTTGTCAGGGCTAAACAAGCCTGGAA
ACACAACAAATCGACTTGGTGTTAATGAAACAGAAGCAAATGTTGAGCAA
ATTCCAGGACTCAACACCCTTGGCGTATCAGCATTCCGTATTGACTATGC
GCCGAATGGGCAAAGCCCGCCTCACATTCACCCCCGTGCCAGTGAAATCC
TGCTGGTCCTGGAAGGAACTCTTTATGCTGGTTTTGTGACATCAGACAAC
CTAAATAACACACTCATCACAAAAGTTCTGCATGAGGGGAGATGTTTTTG
TGTTTCCAATTGGTTTGATTCACTTCCACGTCAACATTGGAAAAACAAGT
GCAGTTGCCTATTCTGGTCTAAACAGCCAGTTCCCCGGTGAAATTACCAT
AGCCGACACGATCTTTGGAGCCCATCCTCGAATCAAACCCGATTTTCTTG
CCAAGGCATTCCA
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