CF510025

Overview
NameCF510025
Unique NameCF510025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.479e-24
Identity = 53/109 (48.62%), Postives = 62/109 (56.88%), Query Frame = 2
Query:   74 LQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDN 400
            +QD CVA  + K      G  C  P    A DF  SGL  PGNTTN +    T A   Q PGLN LG+S  R+D AP G  P H HP ASE+L VL G++ AGFV+S N
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSAN 125          

HSP 2 Score: 40.817 bits (94), Expect = 1.479e-24
Identity = 19/34 (55.88%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPG 539
            G V VFP GL+HF +N GK+SA A    NS  PG
Sbjct:  135 GQVMVFPQGLLHFQINAGKSSASAVVTFNSANPG 168          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.923e-24
Identity = 51/109 (46.79%), Postives = 62/109 (56.88%), Query Frame = 2
Query:   74 LQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDN 400
            +QD CVA     +G    G  CK P      DF  SGL   GNT+N +    T A V Q PG+N LG+S  R+D A  G  P H HP ASE+L+V +GT+ AGFV SDN
Sbjct:   25 VQDFCVADLAAPEGPA--GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDN 131          

HSP 2 Score: 41.5874 bits (96), Expect = 1.923e-24
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  435 RGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPG 539
            +GD+ VFP GL+HF VN G+  A+A++   S  PG
Sbjct:  140 KGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPG 174          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.234e-24
Identity = 55/134 (41.04%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   62 DPSRLQDICVA--IEDPKDGVF-VNGKFCKDPKLATAEDFFLSGLNKPGNTTNRL-GVNETEAN-VEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            DP  L D CVA        G F +NG  C DP LA A+ F  S L++  N    L G N T  +    +PG N  G++  RID AP G +PPH HPRASE  LVL G++  GF    + +  L T++L  G  F
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFA---DTSYRLYTQLLRAGEAF 153          

HSP 2 Score: 48.1358 bits (113), Expect = 4.234e-24
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIGKTS-AVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            G+ FVFP  ++HF  N+   + AV  SGLNSQ PG   +  + F   PR+  + L KAF
Sbjct:  150 GEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAF 208          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.240e-24
Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   74 LQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDN 400
            +QD CVA  DPK     +G  CK+P   T  DF  +GL   GNT+N +    T A      G+N LGVS  R+D A  G  P H HP ASE+L+V++GT+ AGF++S N
Sbjct:   22 VQDFCVA--DPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSAN 128          

HSP 2 Score: 40.4318 bits (93), Expect = 4.240e-24
Identity = 18/35 (51.43%), Postives = 22/35 (62.86%), Query Frame = 3
Query:  435 RGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPG 539
            RGD  VFP GL+HF +N GK  A+A+    S  PG
Sbjct:  137 RGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.406e-23
Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCFCV 454
            D   LQDICVA  D +    V+G  CK      ++DFF   + +  +T+N  GVN T A V   PGLNTLG+S  R D AP G +PPH HPRASE++LVL G +  GF T+    N L +KV+ E   F V
Sbjct:   30 DSPPLQDICVA--DLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTA---ANRLFSKVVREKELFVV 155          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.855e-22
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 2
Query:   74 LQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDN 400
            +QD CVA  + K      G  C  P    A DF  S L  PGNTTN +    T   V Q P LN LG+S  R+D AP G  P H HP ASE+L VL+G++ AGF++S N
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSAN 124          

HSP 2 Score: 39.6614 bits (91), Expect = 4.855e-22
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPG 539
            G V VFP GL+HF +N GKT A A    +S  PG
Sbjct:  134 GQVMVFPQGLLHFQINAGKTPAAALVTFSSASPG 167          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.205e-22
Identity = 47/124 (37.90%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   77 QDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            QD CVA   P      +G  C+     TA DF+   L +PG        +   A V+Q P +N LG+SA R+D  P G  P H HP  SE+L VL+G L AGF++S   +N +  K + +G  F
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS--DNKVYYKEVSKGGMF 149          

HSP 2 Score: 43.1282 bits (100), Expect = 8.205e-22
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 3
Query:  435 RGDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPR-----IKPDFLAKA 608
            +G +FVFP GL+HF  N G T+AVA++  +S  PG + I D    A+       +K  FLA+A
Sbjct:  145 KGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPG-LQILDYALFANNLPTSYVVKGTFLAEA 206          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.064e-21
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTT-NRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCFCV 454
            D   LQD CVA  D K  V VNG  CK    A  E  F S +   G+   N  G N TE +V + PG+NTLGVS  R+D+AP G +PPH+HPRA+E+ +VL G L  G + + ++ N   +KV+  G  F +
Sbjct:   30 DADPLQDFCVADLDSK--VTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVI 159          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.053e-21
Identity = 57/132 (43.18%), Postives = 75/132 (56.82%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTT-NRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCFCV 454
            D   LQD CVA  D K  V VNG  CK    A  E  F S +   G+   N  G N TE +V + PG+NTLGVS  R+D+AP G +PPH+HPRA+E+ +VL G L  G + + +  N   +KV+  G  F +
Sbjct:   30 DADPLQDFCVADLDSK--VTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVI 159          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.929e-20
Identity = 56/122 (45.90%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   74 LQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEG 439
            + D CVA   P      +G  CK+    TA DF  SGL KPGNTTN +    T A V Q PG+  LGV+  R+D AP G  P H HP ASEIL V+EGT+ A F++S    N +  K L+ G
Sbjct:   24 VNDFCVA-NGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPG 141          

HSP 2 Score: 25.0238 bits (53), Expect = 1.929e-20
Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  420 QKFCMRGDVFVFPIGLIHFHVNIGK 494
            +K    GDV VFP GL+ F    GK
Sbjct:  135 EKALYPGDVMVFPQGLLDFQEITGK 159          
The following BLAST results are available for this feature:
BLAST of CF510025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL31_ARATH1.479e-2448.62Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
ABP20_PRUPE1.923e-2446.79Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL31_ORYSJ4.234e-2441.04Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL33_ARATH4.240e-2444.95Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GL12_ORYSJ7.406e-2345.80Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GLP1_BRANA4.855e-2245.87Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL813_ORYSJ8.205e-2237.90Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL34_ORYSJ4.064e-2143.18Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL36_ORYSJ9.053e-2143.18Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GLP1_IPONI1.929e-2045.90Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510025 ID=CF510025; Name=CF510025; organism=Citrus sinensis; type=EST; length=613bp
AATTCAATTTCTTCTAGGTTTTGCTCTCTTGGCTTTGGCTTCTTCTTTGG
CCTCTGCCTATGACCCTAGCCGTCTTCAAGATATCTGTGTAGCCATCGAG
GACCCGAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAA
GCTTGCGACAGCTGAAGATTTCTTCTTGTCAGGGCTAAACAAGCCTGGAA
ACACAACAAATCGACTTGGTGTTAATGAAACAGAAGCAAATGTTGAGCAA
ATTCCAGGACTCAACACCCTTGGCGTATCAGCATTCCGTATTGACTATGC
GCCGAATGGGCAAAGCCCGCCTCACATTCACCCCCGTGCCAGTGAAATCC
TGCTGGTCCTGGAAGGAACTCTTTATGCTGGTTTTGTGACATCAGACAAC
CTAAATAACACACTCATCACAAAAGTTCTGCATGAGGGGAGATGTTTTTG
TGTTTCCAATTGGTTTGATTCACTTCCACGTCAACATTGGAAAAACAAGT
GCAGTTGCCTATTCTGGTCTAAACAGCCAGTTCCCCGGTGAAATTACCAT
AGCCGACACGATCTTTGGAGCCCATCCTCGAATCAAACCCGATTTTCTTG
CCAAGGCATTCCA
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