CF510025

Overview
NameCF510025
Unique NameCF510025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.017e-20
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTT-NRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCFCV 454
            D   LQD CVA  D    V VNG  CK    A  E  F S +   G+   N  G N TE +V + PG+NTLGVS  R+D+AP G +PPH+HPRA+E+ +VL G L  G + + +  N   +KV+  G  F +
Sbjct:   28 DADPLQDFCVA--DLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVI 157          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19
Identity = 52/129 (40.31%), Postives = 72/129 (55.81%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            D   +QD C      +   F+NG  CK+P   TA+DF  + L + G+T N L  N T     + PGLNTLG+S  R D   +G  P H HPR+SE+L V++G ++AGFV   + NN +   VL +G  F
Sbjct:   19 DSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFV---DTNNKIFQTVLQKGDVF 144          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.787e-17
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  143 DPKLATAEDFFLSGLNKPGNTTNRLGVNE---TEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            +P   T + F  +G  K  NT++    N    T+A + + P LN   VS   + + P+  +PPH HPR++E+LLV++G L  GF+   +  N L T+ L  G  F
Sbjct:   41 NPMNITGDFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFI---DTTNKLYTQDLAAGDMF 142          

HSP 2 Score: 48.521 bits (114), Expect = 1.787e-17
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            GD+FVFP G++HF  N G   A+A S   S  PG + +  T+FG    I    LAK+F
Sbjct:  139 GDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSF 194          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 50/129 (38.76%), Postives = 65/129 (50.39%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            D   LQD+C      +  +F+NG FCK P    A DF    LN  G+  N +  +       + PGLNTLG+S  R D A +G   PH HPRASE++ V  G++ AGF    +    L  K L EG  F
Sbjct:   24 DSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFF---DTKGKLFQKTLAEGDVF 149          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 54/121 (44.63%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   77 QDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEG 439
            QD CVA     D     G  CK      A DF   GL   GNT+N +    T A V Q PG+N LG+SA R+D A  G  P H HP ASE+L V +GT+ AGF+TS   +NT+ T+ L+ G
Sbjct:   26 QDFCVADLTCSDTPA--GYPCKAS--VGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAG 140          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 5.728e-15
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 2
Query:  230 TEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            T+A + + P LN   VS   + Y P   +PPH HPR++E+LL+++G L  GFV   +  N L T+ L  G  F
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFV---DTTNKLYTQDLAAGDMF 142          

HSP 2 Score: 46.9802 bits (110), Expect = 5.728e-15
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIGKTSAVAYSGLNSQFPGEITIADTIFGAHPRIKPDFLAKAF 611
            GD+FVFP G++HF  N G   A+A S   S   G +++  T+FG +  I    LAK+F
Sbjct:  139 GDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSF 194          
BLAST of CF510025 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.016e-13
Identity = 40/129 (31.01%), Postives = 58/129 (44.96%), Query Frame = 2
Query:   62 DPSRLQDICVAIEDPKDGVFVNGKFCKDPKLATAEDFFLSGLNKPGNTTNRLGVNETEANVEQIPGLNTLGVSAFRIDYAPNGQSPPHIHPRASEILLVLEGTLYAGFVTSDNLNNTLITKVLHEGRCF 448
            DP  L D  V  +    G+  +G F     L T            GN+ +   +  T+A   + P L    VS   + +     +PPHIHPRASE+L+V++G L  G V +   N T+ T+ L  G  F
Sbjct:   27 DPDILTDFVVPSDTDPSGI--DGAFFTYKNLVT------------GNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMF 140          

HSP 2 Score: 41.2022 bits (95), Expect = 1.016e-13
Identity = 20/46 (43.48%), Postives = 28/46 (60.87%), Query Frame = 3
Query:  438 GDVFVFPIGLIHFHVNIG-KTSAVAYSGLNSQFPGEITIADTIFGA 572
            GD+FVFP G++HF  N G    A A+S   S  PG I++   +FG+
Sbjct:  137 GDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS 182          
The following BLAST results are available for this feature:
BLAST of CF510025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL35_ORYSJ2.017e-2042.42Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL34_ARATH2.230e-1940.31Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL92_ORYSJ1.787e-1734.29Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL111_ORYSJ1.036e-1638.76Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL814_ORYSJ1.145e-1544.63Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL93_ORYSJ5.728e-1539.73Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ1.016e-1331.01Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510025 ID=CF510025; Name=CF510025; organism=Citrus sinensis; type=EST; length=613bp
AATTCAATTTCTTCTAGGTTTTGCTCTCTTGGCTTTGGCTTCTTCTTTGG
CCTCTGCCTATGACCCTAGCCGTCTTCAAGATATCTGTGTAGCCATCGAG
GACCCGAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAA
GCTTGCGACAGCTGAAGATTTCTTCTTGTCAGGGCTAAACAAGCCTGGAA
ACACAACAAATCGACTTGGTGTTAATGAAACAGAAGCAAATGTTGAGCAA
ATTCCAGGACTCAACACCCTTGGCGTATCAGCATTCCGTATTGACTATGC
GCCGAATGGGCAAAGCCCGCCTCACATTCACCCCCGTGCCAGTGAAATCC
TGCTGGTCCTGGAAGGAACTCTTTATGCTGGTTTTGTGACATCAGACAAC
CTAAATAACACACTCATCACAAAAGTTCTGCATGAGGGGAGATGTTTTTG
TGTTTCCAATTGGTTTGATTCACTTCCACGTCAACATTGGAAAAACAAGT
GCAGTTGCCTATTCTGGTCTAAACAGCCAGTTCCCCGGTGAAATTACCAT
AGCCGACACGATCTTTGGAGCCCATCCTCGAATCAAACCCGATTTTCTTG
CCAAGGCATTCCA
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