CF510055

Overview
NameCF510055
Unique NameCF510055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.886e-16
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   83 IKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            I   DV +VG  RTP+G    G L SL   +L + AI   +++  +DP L++EV  G+ LS+  G   AR   L AG+P       +N++C SGL+++ L ++ I+ G  ++ +AGG ESM++
Sbjct:    2 ISHEDVVVVGALRTPIGRATRGKLRSLRNDELVTAAIRGIIEKTGIDPRLIEEVILGHCLSSMEGNVAARMGVLRAGVPVETPVMIINRLCGSGLESVGLIAEKIRSGRIEIGLAGGFESMTS 124          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIKA_CANTR (3-ketoacyl-CoA thiolase A, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.486e-16
Identity = 51/134 (38.06%), Postives = 76/134 (56.72%), Query Frame = 2
Query:   53 QMAPAAASDSIK--PRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            Q+ P A    ++  P DV IV   RT +G GF G+  S+ +  + +  ++  +K+ N+DPSL+++V  GNVL+   G    R A L AGIP +     VN+ C+SGL AI   +  I+ G  +  +AGG ESMS
Sbjct:   10 QLKPNAKQSILQKNPDDVVIVAAYRTAIGKGFKGSFRSVRSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMS 143          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 2
Query:   53 QMAPAAASDSIK--PRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            Q+ P A    ++  P DV IV   RT +G GF G+  ++ +  + +  ++  +K+ N+DPSL+++V  GNVL+   G    R A L AGIP +     VN+ C+SGL AI   +  I+ G  +  +AGG ESMS
Sbjct:   10 QLKPNAKQSILQKNPDDVVIVAAYRTAIGKGFKGSFRNVHSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMS 143          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R+V I    RTP+G F G+LS++ A  L ++ ++A ++R   VD S + EVF G    A    +  AR A L AG+P SV   T+N++CASG+ AI  A ++I  G  ++ +AGG+ESMS
Sbjct:    3 REVFICDAVRTPIGRFGGSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMS 122          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIM_PONAB (3-ketoacyl-CoA thiolase, mitochondrial OS=Pongo abelii GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVL-SANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R V +V   RTP G + G L   +AT L   A +AAL    V P  V  V  GNVL S++     AR   L  GIP      T+N++C SG ++I+   Q I +   +V++ GG ESMS
Sbjct:    5 RGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMS 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIM_HUMAN (3-ketoacyl-CoA thiolase, mitochondrial OS=Homo sapiens GN=ACAA2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVL-SANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R V +V   RTP G + G L   +AT L   A +AAL    V P  V  V  GNVL S++     AR   L  GIP      T+N++C SG ++I+   Q I +   +V++ GG ESMS
Sbjct:    5 RGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMS 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: PCAF_PSESB (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (strain B13) GN=pcaF PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R+V I    RTP+G F G+L+++ A  L ++ ++A ++R   VD S + EV+ G    A    +  AR A L AG+P+SV   T+N++CASG+ A+  A ++I  G  ++++AGG+ESMS
Sbjct:    3 REVYICDAVRTPIGRFGGSLAAVRADDLAAVPVKALVERNPQVDWSQLDEVYLGCANQAGEDNRNVARMALLLAGLPDSVPGVTLNRLCASGMDAVGTAFRAIASGEAELVIAGGVESMS 122          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   62 PAAASDSI---KPRDVCIVGVARTP-MGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            PA   D+I    P DV I    RT    G  G     S+++L +  +E  +K + +DP L+ +V  GNVL+A  G    R A L AGIP +V    +N+ C+SGL A+   +  I+ G  D+ +  G+ESMSN
Sbjct:   15 PAKGLDAITSKNPDDVVITAAYRTAHTKGGKGLFKDTSSSELLASLLEGLVKESKIDPKLIGDVVCGNVLAAGAGATEHRAACLVAGIPETVPFVALNRQCSSGLMAVNDVANKIRAGQIDIGIGCGVESMSN 147          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAI-EAALKRANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R+  I    RTP+G + G LSS+ A  L +I + E  ++   +D   + +V  G    A    +  AR A L AG+P SV  TT+N++C SGL A+  A+++I+ G  D+++AGG+ESMS
Sbjct:    2 REAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS 121          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 45/119 (37.82%), Postives = 60/119 (50.42%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQA-PARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R V IV   RTP G + G L   SAT L   A  AAL    V P  +  V  GNV+ ++   A  AR   L  G+P      T+N++C SG ++I+   Q I     +V++ GG ESMS
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMS 123          
The following BLAST results are available for this feature:
BLAST of CF510055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIK_ENCCU1.886e-1636.593-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
THIKA_CANTR5.486e-1638.063-ketoacyl-CoA thiolase A, peroxisomal OS=Candida ... [more]
THIKB_CANTR1.222e-1537.313-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]
PCAF_PSEAE6.066e-1541.67Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]
THIM_PONAB7.922e-1538.663-ketoacyl-CoA thiolase, mitochondrial OS=Pongo ab... [more]
THIM_HUMAN7.922e-1538.663-ketoacyl-CoA thiolase, mitochondrial OS=Homo sap... [more]
PCAF_PSESB1.351e-1439.17Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (s... [more]
THIK_YARLI1.765e-1436.843-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
PAAJ_ECOLI2.305e-1438.33Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
THIM_MOUSE3.010e-1437.823-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-570 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510055 ID=CF510055; Name=CF510055; organism=Citrus sinensis; type=EST; length=450bp
CCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCATT
GACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAAGCCTAGAGATGTT
TGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGATTTCTTGGTACTCT
ATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCTATTGAAGCTGCTC
TTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGAAGTTTTCTTTGGT
AATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCTAGACAGGCTGCATT
GGGTGCAGGAATTCCGAATTCAGTGGTCTGTACTACTGTTAACAAAGTTT
GTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACAGAGTATCCAGTTG
GGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAAGCATGTCTAACGC
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